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@AllenNeuralDynamics

Allen Institute for Neural Dynamics

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  1. aind-data-schema aind-data-schema Public

    A library that defines AIND data schema and validates JSON.

    Python 30 19

  2. aind-ephys-pipeline aind-ephys-pipeline Public

    AIND pipeline for processing extracellular electrophysiology data

    Nextflow 28 10

  3. openscope-community-predictive-processing openscope-community-predictive-processing Public

    This repository serves as a hub for community-driven contributions, documentation, and project tracking of the OpenScope Predictive Processing Community project.

    Python 16 13

  4. aind-ephys-spikesort-kilosort25-full aind-ephys-spikesort-kilosort25-full Public

    CodeOcean capsule for full electrophysiology analysis pipeline using Kilosort2.5 via SpikeInterface.

    Python 14 3

  5. supervoxel-loss supervoxel-loss Public

    Efficient connectivity-preserving loss function for training neural networks to perform instance segmentation.

    Python 12 3

  6. ibl-ephys-alignment-gui ibl-ephys-alignment-gui Public

    Forked from int-brain-lab/iblapps

    Tool for aligning electrophysiological features to anatomical landmarks

    Python 10 4

Repositories

Showing 10 of 577 repositories
  • aind-data-schema Public

    A library that defines AIND data schema and validates JSON.

    AllenNeuralDynamics/aind-data-schema’s past year of commit activity
    Python 30 MIT 19 48 8 Updated Mar 3, 2026
  • zombie Public
    AllenNeuralDynamics/zombie’s past year of commit activity
    Python 0 MIT 0 8 0 Updated Mar 3, 2026
  • Aind.Experiment.VrForaging-Fip Public

    A repository to run VrForaging + Fip experiments

    AllenNeuralDynamics/Aind.Experiment.VrForaging-Fip’s past year of commit activity
    Python 0 MIT 1 2 1 Updated Mar 3, 2026
  • aind-metadata-viz Public

    Website for public metadata visualization

    AllenNeuralDynamics/aind-metadata-viz’s past year of commit activity
    Python 0 MIT 0 2 0 Updated Mar 3, 2026
  • aind-ephys-utils Public

    Helpful methods for exploring in vivo electrophysiology data

    AllenNeuralDynamics/aind-ephys-utils’s past year of commit activity
    Python 4 MIT 0 0 1 Updated Mar 3, 2026
  • harp-updater-gui Public

    Desktop GUI for updating Harp device firmware using the HarpRegulator CLI

    AllenNeuralDynamics/harp-updater-gui’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Mar 3, 2026
  • aind-metadata-upgrader Public

    Upgrade JSON metadata from old versions of aind-data-schema

    AllenNeuralDynamics/aind-metadata-upgrader’s past year of commit activity
    Python 1 MIT 1 6 1 Updated Mar 3, 2026
  • AllenNeuralDynamics/brainslosher-web-ui’s past year of commit activity
    TypeScript 0 0 1 0 Updated Mar 2, 2026
  • metadata-capture Public Forked from alekkemeny-ant/metadata-capture

    Allen Institute metadata capture system.

    AllenNeuralDynamics/metadata-capture’s past year of commit activity
    Python 0 1 0 0 Updated Mar 3, 2026
  • Aind.Behavior.DynamicForaging Public

    A repository for the Dynamic Foraging task.

    AllenNeuralDynamics/Aind.Behavior.DynamicForaging’s past year of commit activity
    C# 0 MIT 0 8 3 Updated Mar 2, 2026