README.md

Bursts of reproduction can create genetic structure in frequently recombining bacterial populations

Preprint: https://doi.org/10.1101/2025.11.25.690602

Manuscript figures in manuscript_figures/

• Fig 1: example_tree.py
• Fig 2: kingman_progression.py
  • Run parameters and seeds in runs/*
• Fig 3: r_d_distribution_arity.py
• Fig 4: structure_platter.py
  • Run parameters and seeds in runs_structured/*
• Fig 5: three_peaks_segments.py
• Fig 6: liu_and_good.py

Simulation code in cluster/sim.py
Exploratory plotting in ./plt_* and other_figures/