Name	Name	Last commit message	Last commit date
parent directory ..
README.md	README.md
freesurfer-args.json	freesurfer-args.json
freesurfer-recon-all.sh	freesurfer-recon-all.sh
vip-cli.py	vip-cli.py

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Small example using VIP API

./freesurfer-recon-all.sh script launches Freesurfer on VIP server through VIP API.

Requirements

Export the API token before executing ./freesurfer-recon-all.sh

export VIP_API_TOKEN=<token>

Add your Freesurfer license in inputs/LICENSE.txt

For Linux:

via apt

sudo apt-get install datalad

or via PyPI

pip install datalad

Download the T1 image:

datalad get example/freesurfer/inputs/ds001600/sub-1/anat/sub-1_T1w.nii.gz