forked from alshedivat/al-folio
-
Notifications
You must be signed in to change notification settings - Fork 0
Expand file tree
/
Copy pathindex.html
More file actions
248 lines (146 loc) · 10.2 KB
/
index.html
File metadata and controls
248 lines (146 loc) · 10.2 KB
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
<!DOCTYPE html>
<html>
<head>
<meta charset="utf-8">
<meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no">
<meta http-equiv="X-UA-Compatible" content="IE=edge">
<title>J. Cesar Ignacio Espinoza, Ph.D. </title>
<meta name="description" content="A simple, whitespace theme for academics. Based on [*folio](https://github.com/bogoli/-folio) design.
">
<!-- Bootstrap & MDB -->
<link href="https://stackpath.bootstrapcdn.com/bootstrap/4.5.2/css/bootstrap.min.css" rel="stylesheet" integrity="sha512-MoRNloxbStBcD8z3M/2BmnT+rg4IsMxPkXaGh2zD6LGNNFE80W3onsAhRcMAMrSoyWL9xD7Ert0men7vR8LUZg==" crossorigin="anonymous">
<link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/mdbootstrap/4.19.1/css/mdb.min.css" integrity="sha512-RO38pBRxYH3SoOprtPTD86JFOclM51/XTIdEPh5j8sj4tp8jmQIx26twG52UaLi//hQldfrh7e51WzP9wuP32Q==" crossorigin="anonymous" />
<!-- Fonts & Icons -->
<link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.14.0/css/all.min.css" integrity="sha512-1PKOgIY59xJ8Co8+NE6FZ+LOAZKjy+KY8iq0G4B3CyeY6wYHN3yt9PW0XpSriVlkMXe40PTKnXrLnZ9+fkDaog==" crossorigin="anonymous">
<link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/academicons/1.9.0/css/academicons.min.css" integrity="sha512-W4yqoT1+8NLkinBLBZko+dFB2ZbHsYLDdr50VElllRcNt2Q4/GSs6u71UHKxB7S6JEMCp5Ve4xjh3eGQl/HRvg==" crossorigin="anonymous">
<link rel="stylesheet" type="text/css" href="https://fonts.googleapis.com/css?family=Roboto:300,400,500,700|Roboto+Slab:100,300,400,500,700|Material+Icons">
<!-- Styles -->
<link rel="shortcut icon" href="/assets/img/favicon.ico">
<link rel="stylesheet" href="/assets/css/main.css">
<link rel="canonical" href="/">
<!-- Open Graph -->
</head>
<body class="fixed-top-nav ">
<!-- Header -->
<header>
<!-- Nav Bar -->
<nav id="navbar" class="navbar navbar-light bg-white navbar-expand-sm fixed-top">
<div class="container">
<!-- Navbar Toogle -->
<button class="navbar-toggler collapsed ml-auto" type="button" data-toggle="collapse" data-target="#navbarNav" aria-controls="navbarNav" aria-expanded="false" aria-label="Toggle navigation">
<span class="sr-only">Toggle navigation</span>
<span class="icon-bar top-bar"></span>
<span class="icon-bar middle-bar"></span>
<span class="icon-bar bottom-bar"></span>
</button>
<div class="collapse navbar-collapse text-right" id="navbarNav">
<ul class="navbar-nav ml-auto flex-nowrap">
<!-- About -->
<li class="nav-item active">
<a class="nav-link" href="/">
about
<span class="sr-only">(current)</span>
</a>
</li>
<!-- Other pages -->
<li class="nav-item ">
<a class="nav-link" href="/publications/">
publications
</a>
</li>
<li class="nav-item ">
<a class="nav-link" href="/blog/">
ALC
</a>
</li>
<li class="nav-item ">
<a class="nav-link" href="/Resume/">
vitae
</a>
</li>
</ul>
</div>
</div>
</nav>
</header>
<!-- Content -->
<div class="container mt-5">
<div class="post">
<header class="post-header">
<h1 class="post-title">
<span class="font-weight-bold">J. Cesar Ignacio Espinoza, Ph.D.</span>
</h1>
</header>
<article>
<div class="profile float-right">
<img class="img-fluid z-depth-1 rounded" src="/assets/img/prof_pic.jpg">
<div class="address">
<p>Echo Park LA / Oaxaca MX</p>
</div>
</div>
<div class="clearfix">
<p>Accomplished and energetic bioinformatics-trained biologist with a solid track of achievements in genomic and metagenomic research. Passionate and motivated, with an ample background in biological sciences, statistics, and scientific computing. Areas of expertise include next-generation sequencing analysis, genomics, microbiology, virus-host interactions, and molecular biology.</p>
<p>I obtained a Bachelor’s degree in Biology from the Tecnologico del Valle de Oaxaca (Oaxaca, Mexico), where I studied the germination process of cacti; did you know that seeds can tell if they are under shade by the ratio of <a href="https://news.californialightworks.com/how-does-the-far-red-light-spectrum-affect-plants/">red:far-red</a> light they receive?</p>
<p>In 2008 I was selected as a <a href="https://eca.state.gov/fulbright">Fulbright Fellow</a> at the University of Arizona where I received a Master’s of Science degree studying the phylogenomics of T4-like viruses, we found that most of their <a href="https://sfamjournals.onlinelibrary.wiley.com/doi/abs/10.1111/j.1462-2920.2012.02704.x">genes are passed down vertically</a> just like macro-organisms!</p>
<p>I subsequently obtained a PhD degree from the University of Arizona in Molecular and Cellular Biology, where I studied genes and genomes of marine viruses; We uncovered the <a href="https://www.nature.com/articles/nature13459">genome architecture</a> of viruses, annotated <a href="https://www.pnas.org/content/113/9/2436.short">novel structural proteins</a>, and described their <a href="https://science.sciencemag.org/content/348/6237/1261498.summary">distribution patterns</a>.</p>
<p>I spent a few years at the University of Southern California where I got to wear multiple hats (including my field work hat, see image);
My research still focused on understanding virus-host interactions, I actively think on novel methodological techniques to link
viruses to hosts from the <a href="https://academic.oup.com/nargab/article/2/2/lqaa044/5861484">informatic</a> to wet-lab based methods,
and the <a href="https://www.nature.com/articles/s41564-019-0628-x">long-term consequences</a> of virus-host ecological interactions.</p>
<p> Currently, I work in biotech, where I get to look a SARS genomes and more recently human genomes, all what I say here are my opinions </p>
<p> Follow my new blog <a href="https://thednadiaries"> The DNA Diaries </a> where I talk about genes, genomes and genetics</p>
<p>Connect with me following my social media links below.</p>
</div>
<div class="social">
<span class="contact-icon text-center">
<a href="mailto:%6A.%63%65%73%61%72.%69%67%6E%61%63%69%6F@%67%6D%61%69%6C.%63%6F%6D"><i class="fas fa-envelope"></i></a>
<a href="https://orcid.org/0000-0001-9303-7504" target="_blank" title="ORCID"><i class="ai ai-orcid"></i></a>
<a href="https://www.researchgate.net/profile/J_Cesar_Ignacio_Espinoza/" target="_blank" title="ResearchGate"><i class="ai ai-researchgate"></i></a>
<a href="https://github.com/phagenomics" target="_blank" title="GitHub"><i class="fab fa-github"></i></a>
<a href="https://www.linkedin.com/in/j-cesar-ignacio-espinoza-a6140b95" target="_blank" title="LinkedIn"><i class="fab fa-linkedin"></i></a>
<a href="https://twitter.com/phagenomics" target="_blank" title="Twitter"><i class="fab fa-twitter"></i></a>
</span>
<div class="contact-note">Emails are the best way to reach me.
</div>
</div>
</article>
</div>
</div>
<!-- Footer -->
<footer class="fixed-bottom">
<div class="container mt-0">
© Copyright 2023 J. Cesar Ignacio Espinoza, Ph.D. .
Powered by <a href="http://jekyllrb.com/" target="_blank">Jekyll</a> with <a href="https://github.com/alshedivat/al-folio">al-folio</a> theme. Hosted by <a href="https://pages.github.com/" target="_blank">GitHub Pages</a>. Photos from <a href="https://unsplash.com" target="_blank">Unsplash</a>.
</div>
</footer>
</body>
<!-- Load Core and Bootstrap JS -->
<script src="https://code.jquery.com/jquery-3.5.1.slim.min.js" integrity="sha512-/DXTXr6nQodMUiq+IUJYCt2PPOUjrHJ9wFrqpJ3XkgPNOZVfMok7cRw6CSxyCQxXn6ozlESsSh1/sMCTF1rL/g==" crossorigin="anonymous"></script>
<script src="https://cdnjs.cloudflare.com/ajax/libs/popper.js/2.4.4/umd/popper.min.js" integrity="sha512-eUQ9hGdLjBjY3F41CScH3UX+4JDSI9zXeroz7hJ+RteoCaY+GP/LDoM8AO+Pt+DRFw3nXqsjh9Zsts8hnYv8/A==" crossorigin="anonymous"></script>
<script src="https://stackpath.bootstrapcdn.com/bootstrap/4.5.2/js/bootstrap.min.js" integrity="sha512-M5KW3ztuIICmVIhjSqXe01oV2bpe248gOxqmlcYrEzAvws7Pw3z6BK0iGbrwvdrUQUhi3eXgtxp5I8PDo9YfjQ==" crossorigin="anonymous"></script>
<script src="https://cdnjs.cloudflare.com/ajax/libs/mdbootstrap/4.19.1/js/mdb.min.js" integrity="sha512-Mug9KHKmroQFMLm93zGrjhibM2z2Obg9l6qFG2qKjXEXkMp/VDkI4uju9m4QKPjWSwQ6O2qzZEnJDEeCw0Blcw==" crossorigin="anonymous"></script>
<!-- Load Common JS -->
<script src="/assets/js/common.js"></script>
<!-- Code Syntax Highlighting -->
<link rel="stylesheet" href="https://gitcdn.link/repo/jwarby/jekyll-pygments-themes/master/github.css" />
<!-- Load KaTeX -->
<link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/KaTeX/0.12.0/katex.min.css" integrity="sha512-h7nl+xz8wgDlNM4NqKEM4F1NkIRS17M9+uJwIGwuo8vGqIl4BhuCKdxjWEINm+xyrUjNCnK5dCrhM0sj+wTIXw==" crossorigin="anonymous" />
<script src="https://cdnjs.cloudflare.com/ajax/libs/KaTeX/0.12.0/katex.min.js" integrity="sha512-/CMIhXiDA3m2c9kzRyd97MTb3MC6OVnx4TElQ7fkkoRghwDf6gi41gaT1PwF270W6+J60uTmwgeRpNpJdRV6sg==" crossorigin="anonymous"></script>
<script src="/assets/js/katex.js"></script>
<!-- Load Mansory & imagesLoaded -->
<script src="https://cdnjs.cloudflare.com/ajax/libs/masonry/4.2.2/masonry.pkgd.min.js" integrity="" crossorigin="anonymous"></script>
<script src="https://unpkg.com/imagesloaded@4/imagesloaded.pkgd.min.js"></script>
<!-- Project Cards Layout -->
<script type="text/javascript">
// Init Masonry
var $grid = $('.grid').masonry({
gutter: 10,
horizontalOrder: true,
itemSelector: '.grid-item',
});
// layout Masonry after each image loads
$grid.imagesLoaded().progress( function() {
$grid.masonry('layout');
});
</script>
</html>