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Update GRCh38 reference #35

@dorien-er

Description

@dorien-er

Goal:
Update GRCh38 reference test data file

Context:
The repository contains a GRCh38 reference in the test data, but it is unclear how the reference was generated and if it's the latest version.

Files/components to update:

  1. resources_test_scripts/reference_tiny.sh: Add code to generate a subsampled GRCh38 reference. Ideally this reference would be a subsampled version of the latest GRCh38 reference
  2. resources_test/GRCh38: Update the reference
  3. src/mapping/spaceranger_count: validate that tests work with this updated reference. In principle, spaceranger also accepts a .tar.gz reference format. If possible, include a test for both the .tar.gz reference and the uncompressed reference.

Resources:

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