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Examples: Tutorials, WorkShop Materials & Use-Cases

Tutorials

tutorials/demo-vipsession.ipynb : Notebook showing basic use of VipSession.
tutorials/demo-multiple-sessions.py : Python script optimizing the use of several VipSession instances on the same dataset.

Workshop Materials

[MICCAI 2023] repro-brats/: Notebooks for studying the reproducibility of a tumor segmentation pipeline.

Use Cases

bruker_preprocessing/: Preprocessing pipeline for use in the Pilot platform (CREATIS lab).
freesurfer: Freesurfer execution from command-line (contains a Git submodule).

Submodules

To init the Git submodules, run:

git submodule update --init --recursive