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<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
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<div id="projectname">ERF
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<div id="projectbrief">Energy Research and Forecasting: An Atmospheric Modeling Code</div>
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<div class="header">
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<div class="title">ERF.H</div> </div>
</div><!--header-->
<div class="contents">
<a href="ERF_8H.html">Go to the documentation of this file.</a><div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno"> 1</span> <span class="preprocessor">#ifndef ERF_H_</span></div>
<div class="line"><a name="l00002"></a><span class="lineno"> 2</span> <span class="preprocessor">#define ERF_H_</span></div>
<div class="line"><a name="l00003"></a><span class="lineno"> 3</span>  </div>
<div class="line"><a name="l00004"></a><span class="lineno"> 4</span> <span class="preprocessor">#include <string></span></div>
<div class="line"><a name="l00005"></a><span class="lineno"> 5</span> <span class="preprocessor">#include <limits></span></div>
<div class="line"><a name="l00006"></a><span class="lineno"> 6</span> <span class="preprocessor">#include <memory></span></div>
<div class="line"><a name="l00007"></a><span class="lineno"> 7</span>  </div>
<div class="line"><a name="l00008"></a><span class="lineno"> 8</span> <span class="preprocessor">#ifdef _OPENMP</span></div>
<div class="line"><a name="l00009"></a><span class="lineno"> 9</span> <span class="preprocessor">#include <omp.h></span></div>
<div class="line"><a name="l00010"></a><span class="lineno"> 10</span> <span class="preprocessor">#endif</span></div>
<div class="line"><a name="l00011"></a><span class="lineno"> 11</span>  </div>
<div class="line"><a name="l00012"></a><span class="lineno"> 12</span> <span class="preprocessor">#include <AMReX_AmrCore.H></span></div>
<div class="line"><a name="l00013"></a><span class="lineno"> 13</span> <span class="preprocessor">#include <AMReX_BCRec.H></span></div>
<div class="line"><a name="l00014"></a><span class="lineno"> 14</span> <span class="preprocessor">#include <AMReX_Print.H></span></div>
<div class="line"><a name="l00015"></a><span class="lineno"> 15</span>  </div>
<div class="line"><a name="l00016"></a><span class="lineno"> 16</span> <span class="preprocessor">#include <AMReX_ParallelDescriptor.H></span></div>
<div class="line"><a name="l00017"></a><span class="lineno"> 17</span> <span class="preprocessor">#include <AMReX_ParmParse.H></span></div>
<div class="line"><a name="l00018"></a><span class="lineno"> 18</span> <span class="preprocessor">#include <AMReX_MultiFabUtil.H></span></div>
<div class="line"><a name="l00019"></a><span class="lineno"> 19</span> <span class="preprocessor">#include <AMReX_FillPatchUtil.H></span></div>
<div class="line"><a name="l00020"></a><span class="lineno"> 20</span> <span class="preprocessor">#include <AMReX_VisMF.H></span></div>
<div class="line"><a name="l00021"></a><span class="lineno"> 21</span> <span class="preprocessor">#include <AMReX_PhysBCFunct.H></span></div>
<div class="line"><a name="l00022"></a><span class="lineno"> 22</span> <span class="preprocessor">#include <AMReX_YAFluxRegister.H></span></div>
<div class="line"><a name="l00023"></a><span class="lineno"> 23</span> <span class="preprocessor">#include <AMReX_ErrorList.H></span></div>
<div class="line"><a name="l00024"></a><span class="lineno"> 24</span> <span class="preprocessor">#include <AMReX_EBFabFactory.H></span></div>
<div class="line"><a name="l00025"></a><span class="lineno"> 25</span> <span class="preprocessor">#include <AMReX_EBMultiFabUtil.H></span></div>
<div class="line"><a name="l00026"></a><span class="lineno"> 26</span>  </div>
<div class="line"><a name="l00027"></a><span class="lineno"> 27</span> <span class="preprocessor">#include <<a class="code" href="ERF__EB_8H.html">ERF_EB.H</a>></span></div>
<div class="line"><a name="l00028"></a><span class="lineno"> 28</span>  </div>
<div class="line"><a name="l00029"></a><span class="lineno"> 29</span> <span class="preprocessor">#ifdef ERF_USE_FFT</span></div>
<div class="line"><a name="l00030"></a><span class="lineno"> 30</span> <span class="preprocessor">#include <AMReX_FFT_Poisson.H></span></div>
<div class="line"><a name="l00031"></a><span class="lineno"> 31</span> <span class="preprocessor">#endif</span></div>
<div class="line"><a name="l00032"></a><span class="lineno"> 32</span>  </div>
<div class="line"><a name="l00033"></a><span class="lineno"> 33</span> <span class="preprocessor">#ifdef AMREX_MEM_PROFILING</span></div>
<div class="line"><a name="l00034"></a><span class="lineno"> 34</span> <span class="preprocessor">#include <AMReX_MemProfiler.H></span></div>
<div class="line"><a name="l00035"></a><span class="lineno"> 35</span> <span class="preprocessor">#endif</span></div>
<div class="line"><a name="l00036"></a><span class="lineno"> 36</span>  </div>
<div class="line"><a name="l00037"></a><span class="lineno"> 37</span> <span class="preprocessor">#include "<a class="code" href="ERF__ProbCommon_8H.html">ERF_ProbCommon.H</a>"</span></div>
<div class="line"><a name="l00038"></a><span class="lineno"> 38</span>  </div>
<div class="line"><a name="l00039"></a><span class="lineno"> 39</span> <span class="preprocessor">#include <<a class="code" href="ERF__IndexDefines_8H.html">ERF_IndexDefines.H</a>></span></div>
<div class="line"><a name="l00040"></a><span class="lineno"> 40</span> <span class="preprocessor">#include <<a class="code" href="ERF__DataStruct_8H.html">ERF_DataStruct.H</a>></span></div>
<div class="line"><a name="l00041"></a><span class="lineno"> 41</span> <span class="preprocessor">#include <<a class="code" href="ERF__TurbPertStruct_8H.html">ERF_TurbPertStruct.H</a>></span></div>
<div class="line"><a name="l00042"></a><span class="lineno"> 42</span> <span class="preprocessor">#include <<a class="code" href="ERF__InputSoundingData_8H.html">ERF_InputSoundingData.H</a>></span></div>
<div class="line"><a name="l00043"></a><span class="lineno"> 43</span> <span class="preprocessor">#include <<a class="code" href="ERF__InputSpongeData_8H.html">ERF_InputSpongeData.H</a>></span></div>
<div class="line"><a name="l00044"></a><span class="lineno"> 44</span> <span class="preprocessor">#include <<a class="code" href="ERF__SurfaceLayer_8H.html">ERF_SurfaceLayer.H</a>></span></div>
<div class="line"><a name="l00045"></a><span class="lineno"> 45</span> <span class="preprocessor">#include <<a class="code" href="ERF__Derive_8H.html">ERF_Derive.H</a>></span></div>
<div class="line"><a name="l00046"></a><span class="lineno"> 46</span> <span class="preprocessor">#include <<a class="code" href="ERF__ReadBndryPlanes_8H.html">ERF_ReadBndryPlanes.H</a>></span></div>
<div class="line"><a name="l00047"></a><span class="lineno"> 47</span> <span class="preprocessor">#include <<a class="code" href="ERF__WriteBndryPlanes_8H.html">ERF_WriteBndryPlanes.H</a>></span></div>
<div class="line"><a name="l00048"></a><span class="lineno"> 48</span> <span class="preprocessor">#include <<a class="code" href="ERF__MRI_8H.html">ERF_MRI.H</a>></span></div>
<div class="line"><a name="l00049"></a><span class="lineno"> 49</span> <span class="preprocessor">#include <<a class="code" href="ERF__PhysBCFunct_8H.html">ERF_PhysBCFunct.H</a>></span></div>
<div class="line"><a name="l00050"></a><span class="lineno"> 50</span> <span class="preprocessor">#include <<a class="code" href="ERF__FillPatcher_8H.html">ERF_FillPatcher.H</a>></span></div>
<div class="line"><a name="l00051"></a><span class="lineno"> 51</span> <span class="preprocessor">#include <<a class="code" href="ERF__SampleData_8H.html">ERF_SampleData.H</a>></span></div>
<div class="line"><a name="l00052"></a><span class="lineno"> 52</span> <span class="preprocessor">#include <<a class="code" href="ERF__ForestDrag_8H.html">ERF_ForestDrag.H</a>></span></div>
<div class="line"><a name="l00053"></a><span class="lineno"> 53</span>  </div>
<div class="line"><a name="l00054"></a><span class="lineno"> 54</span> <span class="preprocessor">#ifdef ERF_USE_PARTICLES</span></div>
<div class="line"><a name="l00055"></a><span class="lineno"> 55</span> <span class="preprocessor">#include "<a class="code" href="ERF__ParticleData_8H.html">ERF_ParticleData.H</a>"</span></div>
<div class="line"><a name="l00056"></a><span class="lineno"> 56</span> <span class="preprocessor">#endif</span></div>
<div class="line"><a name="l00057"></a><span class="lineno"> 57</span>  </div>
<div class="line"><a name="l00058"></a><span class="lineno"> 58</span> <span class="preprocessor">#include "<a class="code" href="ERF__EulerianMicrophysics_8H.html">ERF_EulerianMicrophysics.H</a>"</span></div>
<div class="line"><a name="l00059"></a><span class="lineno"> 59</span> <span class="preprocessor">#include "<a class="code" href="ERF__LagrangianMicrophysics_8H.html">ERF_LagrangianMicrophysics.H</a>"</span></div>
<div class="line"><a name="l00060"></a><span class="lineno"> 60</span> <span class="preprocessor">#include "<a class="code" href="ERF__LandSurface_8H.html">ERF_LandSurface.H</a>"</span></div>
<div class="line"><a name="l00061"></a><span class="lineno"> 61</span>  </div>
<div class="line"><a name="l00062"></a><span class="lineno"> 62</span> <span class="preprocessor">#ifdef ERF_USE_WINDFARM</span></div>
<div class="line"><a name="l00063"></a><span class="lineno"> 63</span> <span class="preprocessor">#include "<a class="code" href="ERF__WindFarm_8H.html">ERF_WindFarm.H</a>"</span></div>
<div class="line"><a name="l00064"></a><span class="lineno"> 64</span> <span class="preprocessor">#endif</span></div>
<div class="line"><a name="l00065"></a><span class="lineno"> 65</span>  </div>
<div class="line"><a name="l00066"></a><span class="lineno"> 66</span> <span class="preprocessor">#include <<a class="code" href="ERF__RadiationModels_8H.html">ERF_RadiationModels.H</a>></span></div>
<div class="line"><a name="l00067"></a><span class="lineno"> 67</span>  </div>
<div class="line"><a name="l00068"></a><span class="lineno"> 68</span> <span class="preprocessor">#ifdef ERF_USE_SHOC</span></div>
<div class="line"><a name="l00069"></a><span class="lineno"> 69</span> <span class="preprocessor">#include "<a class="code" href="ERF__ShocInterface_8H.html">ERF_ShocInterface.H</a>"</span></div>
<div class="line"><a name="l00070"></a><span class="lineno"> 70</span> <span class="preprocessor">#endif</span></div>
<div class="line"><a name="l00071"></a><span class="lineno"> 71</span>  </div>
<div class="line"><a name="l00072"></a><span class="lineno"> 72</span> <span class="preprocessor">#ifdef ERF_USE_P3</span></div>
<div class="line"><a name="l00073"></a><span class="lineno"> 73</span> <span class="preprocessor">#include "ERF_P3Interface.H"</span></div>
<div class="line"><a name="l00074"></a><span class="lineno"> 74</span> <span class="preprocessor">#endif</span></div>
<div class="line"><a name="l00075"></a><span class="lineno"> 75</span>  </div>
<div class="line"><a name="l00076"></a><span class="lineno"> 76</span> <span class="preprocessor">#include <iostream></span></div>
<div class="line"><a name="l00077"></a><span class="lineno"> 77</span>  </div>
<div class="line"><a name="l00078"></a><span class="lineno"> 78</span> <span class="preprocessor">#ifdef AMREX_LAZY</span></div>
<div class="line"><a name="l00079"></a><span class="lineno"> 79</span> <span class="preprocessor">#include <AMReX_Lazy.H></span></div>
<div class="line"><a name="l00080"></a><span class="lineno"> 80</span> <span class="preprocessor">#endif</span></div>
<div class="line"><a name="l00081"></a><span class="lineno"> 81</span>  </div>
<div class="line"><a name="l00082"></a><span class="lineno"> 82</span> <span class="preprocessor">#ifndef AMREX_USE_MPI</span></div>
<div class="line"><a name="l00083"></a><span class="lineno"> 83</span> <span class="keyword">using</span> amrex::MPI_COMM_WORLD;</div>
<div class="line"><a name="l00084"></a><span class="lineno"> 84</span> <span class="keyword">using</span> amrex::MPI_Comm;</div>
<div class="line"><a name="l00085"></a><span class="lineno"> 85</span> <span class="preprocessor">#endif</span></div>
<div class="line"><a name="l00086"></a><span class="lineno"> 86</span>  </div>
<div class="line"><a name="l00087"></a><span class="lineno"> 87</span> <span class="preprocessor">#ifdef ERF_USE_MULTIBLOCK</span></div>
<div class="line"><a name="l00088"></a><span class="lineno"> 88</span> <span class="keyword">class </span>MultiBlockContainer;</div>
<div class="line"><a name="l00089"></a><span class="lineno"> 89</span> <span class="preprocessor">#endif</span></div>
<div class="line"><a name="l00090"></a><span class="lineno"> 90</span> <span class="comment"></span> </div>
<div class="line"><a name="l00091"></a><span class="lineno"> 91</span> <span class="comment">/**</span></div>
<div class="line"><a name="l00092"></a><span class="lineno"> 92</span> <span class="comment"> * Enum of possible interpolation types between coarse/fine</span></div>
<div class="line"><a name="l00093"></a><span class="lineno"> 93</span> <span class="comment">*/</span></div>
<div class="line"><a name="l00094"></a><span class="lineno"><a class="line" href="ERF_8H.html#a5ec6fb22ac274a44a8dbf881fecbe144"> 94</a></span> <a class="code" href="ERF_8H.html#a5ec6fb22ac274a44a8dbf881fecbe144">AMREX_ENUM</a>(StateInterpType,</div>
<div class="line"><a name="l00095"></a><span class="lineno"> 95</span>  FullState, Perturbational</div>
<div class="line"><a name="l00096"></a><span class="lineno"> 96</span> );</div>
<div class="line"><a name="l00097"></a><span class="lineno"> 97</span> <span class="comment"></span> </div>
<div class="line"><a name="l00098"></a><span class="lineno"> 98</span> <span class="comment">/**</span></div>
<div class="line"><a name="l00099"></a><span class="lineno"> 99</span> <span class="comment"> * Enum of possible plotfile types</span></div>
<div class="line"><a name="l00100"></a><span class="lineno"> 100</span> <span class="comment">*/</span></div>
<div class="line"><a name="l00101"></a><span class="lineno"><a class="line" href="ERF_8H.html#a6b6b6faa8ce9b3e9b869c29b6e7a4cf4"> 101</a></span> <a class="code" href="ERF_8H.html#a5ec6fb22ac274a44a8dbf881fecbe144">AMREX_ENUM</a>(PlotFileType,</div>
<div class="line"><a name="l00102"></a><span class="lineno"> 102</span>  <a class="code" href="ERF__DampingStruct_8H.html#ada1fed43d749500e09ded1d6800449a1a6adf97f83acf6453d4a6a4b1070f3754">None</a>, Amrex, Netcdf</div>
<div class="line"><a name="l00103"></a><span class="lineno"> 103</span> );</div>
<div class="line"><a name="l00104"></a><span class="lineno"> 104</span> <span class="comment"></span> </div>
<div class="line"><a name="l00105"></a><span class="lineno"> 105</span> <span class="comment">/**</span></div>
<div class="line"><a name="l00106"></a><span class="lineno"> 106</span> <span class="comment"> * Main class in ERF code, instantiated from main.cpp</span></div>
<div class="line"><a name="l00107"></a><span class="lineno"> 107</span> <span class="comment">*/</span></div>
<div class="line"><a name="l00108"></a><span class="lineno"> 108</span>  </div>
<div class="line"><a name="l00109"></a><span class="lineno"><a class="line" href="classERF.html"> 109</a></span> <span class="keyword">class </span><a class="code" href="classERF.html">ERF</a></div>
<div class="line"><a name="l00110"></a><span class="lineno"> 110</span>  : <span class="keyword">public</span> amrex::AmrCore</div>
<div class="line"><a name="l00111"></a><span class="lineno"> 111</span> {</div>
<div class="line"><a name="l00112"></a><span class="lineno"> 112</span> <span class="keyword">public</span>:</div>
<div class="line"><a name="l00113"></a><span class="lineno"> 113</span> <span class="comment"></span> </div>
<div class="line"><a name="l00114"></a><span class="lineno"> 114</span> <span class="comment"> ////////////////</span></div>
<div class="line"><a name="l00115"></a><span class="lineno"> 115</span> <span class="comment"></span> <span class="comment">// public member functions</span></div>
<div class="line"><a name="l00116"></a><span class="lineno"> 116</span>  </div>
<div class="line"><a name="l00117"></a><span class="lineno"> 117</span>  <span class="comment">// constructor - reads in parameters from inputs file</span></div>
<div class="line"><a name="l00118"></a><span class="lineno"> 118</span>  <span class="comment">// - sizes multilevel arrays and data structures</span></div>
<div class="line"><a name="l00119"></a><span class="lineno"> 119</span>  <a class="code" href="classERF.html#a30129012dd367825e5e4fd1406694f58">ERF</a> ();</div>
<div class="line"><a name="l00120"></a><span class="lineno"><a class="line" href="classERF.html#a30901583bd41e7bf4dddb3c1ea329dfe"> 120</a></span>  <a class="code" href="classERF.html#a30901583bd41e7bf4dddb3c1ea329dfe">~ERF</a> () <span class="keyword">override</span>;</div>
<div class="line"><a name="l00121"></a><span class="lineno"> 121</span>  </div>
<div class="line"><a name="l00122"></a><span class="lineno"> 122</span>  <span class="keywordtype">void</span> <a class="code" href="classERF.html#aab5871c91a4d8888c110865e9d35e8b2">ERF_shared</a> ();</div>
<div class="line"><a name="l00123"></a><span class="lineno"> 123</span>  </div>
<div class="line"><a name="l00124"></a><span class="lineno"> 124</span>  <span class="comment">// Declare a default move constructor so we ensure the destructor is</span></div>
<div class="line"><a name="l00125"></a><span class="lineno"> 125</span>  <span class="comment">// not called when we return an object of this class by value</span></div>
<div class="line"><a name="l00126"></a><span class="lineno"><a class="line" href="classERF.html#a13fc8f3a00573ee7735c3228316164a9"> 126</a></span>  <a class="code" href="classERF.html#a13fc8f3a00573ee7735c3228316164a9">ERF</a> (<a class="code" href="classERF.html">ERF</a>&&) noexcept = delete;</div>
<div class="line"><a name="l00127"></a><span class="lineno"> 127</span>  </div>
<div class="line"><a name="l00128"></a><span class="lineno"> 128</span>  <span class="comment">// Declare a default move assignment operator</span></div>
<div class="line"><a name="l00129"></a><span class="lineno"><a class="line" href="classERF.html#abbc40e6fe700b80e3666dd3723624f05"> 129</a></span>  <a class="code" href="classERF.html">ERF</a>& operator=(<a class="code" href="classERF.html">ERF</a>&& other) noexcept = delete;</div>
<div class="line"><a name="l00130"></a><span class="lineno"> 130</span>  </div>
<div class="line"><a name="l00131"></a><span class="lineno"> 131</span>  <span class="comment">// Delete the copy constructor</span></div>
<div class="line"><a name="l00132"></a><span class="lineno"><a class="line" href="classERF.html#af4f5db4e6643e9ebc8ffeebcbca3978a"> 132</a></span>  <a class="code" href="classERF.html">ERF</a> (const <a class="code" href="classERF.html">ERF</a>& other) = delete;</div>
<div class="line"><a name="l00133"></a><span class="lineno"> 133</span>  <span class="comment">//</span></div>
<div class="line"><a name="l00134"></a><span class="lineno"> 134</span>  <span class="comment">// Delete the copy assignment operator</span></div>
<div class="line"><a name="l00135"></a><span class="lineno"><a class="line" href="classERF.html#a72fcc41d6f5225e9ca3b8c9111ff37e7"> 135</a></span>  <a class="code" href="classERF.html">ERF</a>& operator=(const <a class="code" href="classERF.html">ERF</a>& other) = delete;</div>
<div class="line"><a name="l00136"></a><span class="lineno"> 136</span>  </div>
<div class="line"><a name="l00137"></a><span class="lineno"> 137</span>  <span class="comment">// Advance solution to final time</span></div>
<div class="line"><a name="l00138"></a><span class="lineno"> 138</span>  <span class="keywordtype">void</span> <a class="code" href="classERF.html#a0be12798b46f52fa4b5a995f147c3f96">Evolve</a> ();</div>
<div class="line"><a name="l00139"></a><span class="lineno"> 139</span>  </div>
<div class="line"><a name="l00140"></a><span class="lineno"> 140</span>  <span class="comment">// Tag cells for refinement</span></div>
<div class="line"><a name="l00141"></a><span class="lineno"> 141</span>  <span class="keywordtype">void</span> <a class="code" href="classERF.html#a18e6dbbf968b4492e78aa427791620f4">ErrorEst</a> (<span class="keywordtype">int</span> lev, <a class="code" href="namespaceamrex.html">amrex</a>::TagBoxArray& tags, <a class="code" href="namespaceamrex.html">amrex</a>::<a class="code" href="ERF__ShocInterface_8H.html#ab8a9d2a7cbf2084043f890c3d0a68f57">Real</a> time, <span class="keywordtype">int</span> ngrow) override;</div>
<div class="line"><a name="l00142"></a><span class="lineno"> 142</span>  </div>
<div class="line"><a name="l00143"></a><span class="lineno"> 143</span>  <span class="comment">// Refinement criteria for hurricanes</span></div>
<div class="line"><a name="l00144"></a><span class="lineno"> 144</span>  <span class="keywordtype">void</span> <a class="code" href="classERF.html#a73cc1a17627362e70472827b47745d48">HurricaneTracker</a> (<span class="keywordtype">int</span> lev,</div>
<div class="line"><a name="l00145"></a><span class="lineno"> 145</span>  <a class="code" href="namespaceamrex.html">amrex</a>::<a class="code" href="ERF__ShocInterface_8H.html#ab8a9d2a7cbf2084043f890c3d0a68f57">Real</a> time,</div>
<div class="line"><a name="l00146"></a><span class="lineno"> 146</span>  const <a class="code" href="namespaceamrex.html">amrex</a>::MultiFab& cc_vel,</div>
<div class="line"><a name="l00147"></a><span class="lineno"> 147</span>  const <a class="code" href="namespaceamrex.html">amrex</a>::<a class="code" href="ERF__ShocInterface_8H.html#ab8a9d2a7cbf2084043f890c3d0a68f57">Real</a> velmag_threshold,</div>
<div class="line"><a name="l00148"></a><span class="lineno"> 148</span>  <a class="code" href="namespaceamrex.html">amrex</a>::TagBoxArray* tags = <span class="keywordtype">nullptr</span>);</div>
<div class="line"><a name="l00149"></a><span class="lineno"> 149</span>  </div>
<div class="line"><a name="l00150"></a><span class="lineno"> 150</span>  <span class="keywordtype">bool</span> <a class="code" href="classERF.html#a2e077291b715bbe369f9f1f414778545">FindInitialEye</a> (<span class="keywordtype">int</span> lev,</div>
<div class="line"><a name="l00151"></a><span class="lineno"> 151</span>  const <a class="code" href="namespaceamrex.html">amrex</a>::MultiFab& cc_vel,</div>
<div class="line"><a name="l00152"></a><span class="lineno"> 152</span>  const <a class="code" href="namespaceamrex.html">amrex</a>::<a class="code" href="ERF__ShocInterface_8H.html#ab8a9d2a7cbf2084043f890c3d0a68f57">Real</a> velmag_threshold,</div>
<div class="line"><a name="l00153"></a><span class="lineno"> 153</span>  <a class="code" href="namespaceamrex.html">amrex</a>::<a class="code" href="ERF__ShocInterface_8H.html#ab8a9d2a7cbf2084043f890c3d0a68f57">Real</a>& eye_x, <a class="code" href="namespaceamrex.html">amrex</a>::<a class="code" href="ERF__ShocInterface_8H.html#ab8a9d2a7cbf2084043f890c3d0a68f57">Real</a>& eye_y);</div>
<div class="line"><a name="l00154"></a><span class="lineno"> 154</span>  </div>
<div class="line"><a name="l00155"></a><span class="lineno"> 155</span>  <span class="comment">// Hurricane track line output as VTKPolyline</span></div>
<div class="line"><a name="l00156"></a><span class="lineno"><a class="line" href="classERF.html#a90e949ea154768582dd0aff3d691b0db"> 156</a></span>  <a class="code" href="namespaceamrex.html">amrex</a>::Vector<std::array<<a class="code" href="namespaceamrex.html">amrex</a>::<a class="code" href="ERF__ShocInterface_8H.html#ab8a9d2a7cbf2084043f890c3d0a68f57">Real</a>, 2>> <a class="code" href="classERF.html#a90e949ea154768582dd0aff3d691b0db">hurricane_track_xy</a>;</div>
<div class="line"><a name="l00157"></a><span class="lineno"><a class="line" href="classERF.html#a25483a9e0d04422c18a900edc79c2cb0"> 157</a></span>  <a class="code" href="namespaceamrex.html">amrex</a>::Vector<std::array<<a class="code" href="namespaceamrex.html">amrex</a>::<a class="code" href="ERF__ShocInterface_8H.html#ab8a9d2a7cbf2084043f890c3d0a68f57">Real</a>, 2>> <a class="code" href="classERF.html#a25483a9e0d04422c18a900edc79c2cb0">hurricane_eye_track_xy</a>,</div>
<div class="line"><a name="l00158"></a><span class="lineno"><a class="line" href="classERF.html#a9993ba4b5404503408ae0815537cb8b5"> 158</a></span>  <a class="code" href="classERF.html#a9993ba4b5404503408ae0815537cb8b5">hurricane_eye_track_latlon</a>,</div>
<div class="line"><a name="l00159"></a><span class="lineno"><a class="line" href="classERF.html#a371c13c3bbaa8b008107a5b33a2b5c8b"> 159</a></span>  <a class="code" href="classERF.html#a371c13c3bbaa8b008107a5b33a2b5c8b">hurricane_maxvel_vs_time</a>,</div>
<div class="line"><a name="l00160"></a><span class="lineno"><a class="line" href="classERF.html#a51d7bfc7df9886e7ebec38ebda132799"> 160</a></span>  <a class="code" href="classERF.html#a51d7bfc7df9886e7ebec38ebda132799">hurricane_minpressure_vs_time</a>,</div>
<div class="line"><a name="l00161"></a><span class="lineno"><a class="line" href="classERF.html#a35d13836e4cdad9e9a82cf7033f9828b"> 161</a></span>  <a class="code" href="classERF.html#a35d13836e4cdad9e9a82cf7033f9828b">hurricane_tracker_circle</a>;</div>
<div class="line"><a name="l00162"></a><span class="lineno"><a class="line" href="classERF.html#aea413ea4ba806072d057f6940260b60e"> 162</a></span>  <a class="code" href="namespaceamrex.html">amrex</a>::Vector<<a class="code" href="namespaceamrex.html">amrex</a>::MultiFab> <a class="code" href="classERF.html#aea413ea4ba806072d057f6940260b60e">weather_forecast_data_1</a>, <a class="code" href="classERF.html#aa4dcce24f4651f525a5e1694122fbf3c">weather_forecast_data_2</a>;</div>
<div class="line"><a name="l00163"></a><span class="lineno"><a class="line" href="classERF.html#ad88cf0283fabc67a73fff4f7e5146562"> 163</a></span>  <a class="code" href="namespaceamrex.html">amrex</a>::Vector<<a class="code" href="namespaceamrex.html">amrex</a>::Vector<<a class="code" href="namespaceamrex.html">amrex</a>::MultiFab>> <a class="code" href="classERF.html#ad88cf0283fabc67a73fff4f7e5146562">forecast_state_1</a>,</div>
<div class="line"><a name="l00164"></a><span class="lineno"><a class="line" href="classERF.html#ac294ebab750ac9227919bec21fafa30f"> 164</a></span>  <a class="code" href="classERF.html#ac294ebab750ac9227919bec21fafa30f">forecast_state_2</a>,</div>
<div class="line"><a name="l00165"></a><span class="lineno"><a class="line" href="classERF.html#a2de51c12d8c320a4f66876bc5d29f0cd"> 165</a></span>  <a class="code" href="classERF.html#a2de51c12d8c320a4f66876bc5d29f0cd">forecast_state_interp</a>;</div>
<div class="line"><a name="l00166"></a><span class="lineno"><a class="line" href="classERF.html#a6dcba20c740585c7eaa7fc17ae9acf7c"> 166</a></span>  <a class="code" href="namespaceamrex.html">amrex</a>::Vector<<a class="code" href="namespaceamrex.html">amrex</a>::MultiFab> <a class="code" href="classERF.html#a6dcba20c740585c7eaa7fc17ae9acf7c">surface_state_1</a>,</div>
<div class="line"><a name="l00167"></a><span class="lineno"><a class="line" href="classERF.html#a93995f811ca42f6012d16dc95f004dc6"> 167</a></span>  <a class="code" href="classERF.html#a93995f811ca42f6012d16dc95f004dc6">surface_state_2</a>,</div>
<div class="line"><a name="l00168"></a><span class="lineno"><a class="line" href="classERF.html#ae8c859642e61e404530964060e8485ab"> 168</a></span>  <a class="code" href="classERF.html#ae8c859642e61e404530964060e8485ab">surface_state_interp</a>;</div>
<div class="line"><a name="l00169"></a><span class="lineno"> 169</span>  </div>
<div class="line"><a name="l00170"></a><span class="lineno"> 170</span>  std::<span class="keywordtype">string</span> <a class="code" href="classERF.html#a758170966de01c9030c39a3840d29395">MakeVTKFilename</a>(<span class="keywordtype">int</span> nstep);</div>
<div class="line"><a name="l00171"></a><span class="lineno"> 171</span>  std::<span class="keywordtype">string</span> <a class="code" href="classERF.html#aa0b0c9acac162cadfc3b6fa2c01943f9">MakeVTKFilename_TrackerCircle</a>(<span class="keywordtype">int</span> nstep);</div>
<div class="line"><a name="l00172"></a><span class="lineno"> 172</span>  std::<span class="keywordtype">string</span> <a class="code" href="classERF.html#aa32afd0c72b0fc1be2f8ca43deeefbdd">MakeVTKFilename_EyeTracker_xy</a>(<span class="keywordtype">int</span> nstep);</div>
<div class="line"><a name="l00173"></a><span class="lineno"> 173</span>  std::<span class="keywordtype">string</span> <a class="code" href="classERF.html#af668b1bb4cd05f121080295dbb1deeeb">MakeFilename_EyeTracker_latlon</a>(<span class="keywordtype">int</span> nstep);</div>
<div class="line"><a name="l00174"></a><span class="lineno"> 174</span>  std::<span class="keywordtype">string</span> <a class="code" href="classERF.html#a1d3453cd3d99ceb5930bdcbee9cb3f91">MakeFilename_EyeTracker_maxvel</a>(<span class="keywordtype">int</span> nstep);</div>
<div class="line"><a name="l00175"></a><span class="lineno"> 175</span>  std::<span class="keywordtype">string</span> <a class="code" href="classERF.html#ac470cb7f111c572a074bd3959a3344d8">MakeFilename_EyeTracker_minpressure</a>(<span class="keywordtype">int</span> nstep);</div>
<div class="line"><a name="l00176"></a><span class="lineno"> 176</span>  <span class="keywordtype">void</span> <a class="code" href="classERF.html#ad3613d455e3c246e5addf88054fa41db">WriteVTKPolyline</a>(const std::<span class="keywordtype">string</span>& filename,</div>
<div class="line"><a name="l00177"></a><span class="lineno"> 177</span>  <a class="code" href="namespaceamrex.html">amrex</a>::Vector<std::array<<a class="code" href="namespaceamrex.html">amrex</a>::<a class="code" href="ERF__ShocInterface_8H.html#ab8a9d2a7cbf2084043f890c3d0a68f57">Real</a>, 2>>& points_xy);</div>
<div class="line"><a name="l00178"></a><span class="lineno"> 178</span>  </div>
<div class="line"><a name="l00179"></a><span class="lineno"> 179</span>  <span class="keywordtype">void</span> <a class="code" href="classERF.html#acc09d9fff8183ff646e21478760fccb0">WriteLinePlot</a>(const std::<span class="keywordtype">string</span>& filename,</div>
<div class="line"><a name="l00180"></a><span class="lineno"> 180</span>  <a class="code" href="namespaceamrex.html">amrex</a>::Vector<std::array<<a class="code" href="namespaceamrex.html">amrex</a>::<a class="code" href="ERF__ShocInterface_8H.html#ab8a9d2a7cbf2084043f890c3d0a68f57">Real</a>, 2>>& points_xy);</div>
<div class="line"><a name="l00181"></a><span class="lineno"> 181</span>  </div>
<div class="line"><a name="l00182"></a><span class="lineno"> 182</span>  <span class="comment">// Initialize multilevel data</span></div>
<div class="line"><a name="l00183"></a><span class="lineno"> 183</span>  <span class="keywordtype">void</span> <a class="code" href="classERF.html#ad5d585e110291969767013a515719224">InitData</a> ();</div>
<div class="line"><a name="l00184"></a><span class="lineno"> 184</span>  </div>
<div class="line"><a name="l00185"></a><span class="lineno"> 185</span>  <span class="comment">// Initialize multilevel data before MultiBlock</span></div>
<div class="line"><a name="l00186"></a><span class="lineno"> 186</span>  <span class="keywordtype">void</span> <a class="code" href="classERF.html#a9084860e0049795487636a9e0ccbc89e">InitData_pre</a> ();</div>
<div class="line"><a name="l00187"></a><span class="lineno"> 187</span>  </div>
<div class="line"><a name="l00188"></a><span class="lineno"> 188</span>  <span class="comment">// Initialize multilevel data after MultiBlock</span></div>
<div class="line"><a name="l00189"></a><span class="lineno"> 189</span>  <span class="keywordtype">void</span> <a class="code" href="classERF.html#aa8b243c093bd872b6f7592603ff97792">InitData_post</a> ();</div>
<div class="line"><a name="l00190"></a><span class="lineno"> 190</span>  </div>
<div class="line"><a name="l00191"></a><span class="lineno"> 191</span>  <span class="comment">// Interpolate 2D arrays lat_m, lon_m, sinPhi, cosPhi</span></div>
<div class="line"><a name="l00192"></a><span class="lineno"> 192</span>  <span class="keywordtype">void</span> <a class="code" href="classERF.html#ac3b264bdcc7f9251ccbd9b2f8f4080ec">Interp2DArrays</a> (<span class="keywordtype">int</span> lev, const <a class="code" href="namespaceamrex.html">amrex</a>::BoxArray& my_ba2d, const <a class="code" href="namespaceamrex.html">amrex</a>::DistributionMapping& my_dm);</div>
<div class="line"><a name="l00193"></a><span class="lineno"> 193</span>  </div>
<div class="line"><a name="l00194"></a><span class="lineno"><a class="line" href="classERF.html#a31b92a0c6fa4e19ff90feef3611f5f06"> 194</a></span>  <span class="keywordtype">void</span> <a class="code" href="classERF.html#a31b92a0c6fa4e19ff90feef3611f5f06">WriteMyEBSurface</a> ();</div>
<div class="line"><a name="l00195"></a><span class="lineno"> 195</span>  </div>
<div class="line"><a name="l00196"></a><span class="lineno"> 196</span>  <span class="comment">// Compute the divergence -- whether EB, no-terrain, flat terrain or general terrain</span></div>
<div class="line"><a name="l00197"></a><span class="lineno"> 197</span>  <span class="keywordtype">void</span> <a class="code" href="classERF.html#a757e8303ce8ed936c05f559349f10aa5">compute_divergence</a> (<span class="keywordtype">int</span> lev, <a class="code" href="namespaceamrex.html">amrex</a>::MultiFab& rhs, <a class="code" href="namespaceamrex.html">amrex</a>::Array<<a class="code" href="namespaceamrex.html">amrex</a>::MultiFab const*,AMREX_SPACEDIM> rho0_u_const,</div>
<div class="line"><a name="l00198"></a><span class="lineno"> 198</span>  <a class="code" href="namespaceamrex.html">amrex</a>::Geometry const& geom_at_lev);</div>
<div class="line"><a name="l00199"></a><span class="lineno"> 199</span>  </div>
<div class="line"><a name="l00200"></a><span class="lineno"> 200</span>  <span class="comment">// Project the velocities to be divergence-free -- this is only relevant if anelastic == 1</span></div>
<div class="line"><a name="l00201"></a><span class="lineno"> 201</span>  <span class="keywordtype">void</span> <a class="code" href="classERF.html#a14698837158d0686f77cb0a056799ecb">project_initial_velocity</a> (<span class="keywordtype">int</span> lev, <a class="code" href="namespaceamrex.html">amrex</a>::<a class="code" href="ERF__ShocInterface_8H.html#ab8a9d2a7cbf2084043f890c3d0a68f57">Real</a> time, <a class="code" href="namespaceamrex.html">amrex</a>::<a class="code" href="ERF__ShocInterface_8H.html#ab8a9d2a7cbf2084043f890c3d0a68f57">Real</a> <a class="code" href="classERF.html#ad34bae243fdb6c3029f5abe4fb4bca2d">dt</a>);</div>
<div class="line"><a name="l00202"></a><span class="lineno"> 202</span>  <span class="keywordtype">void</span> <a class="code" href="classERF.html#a51282d7dea7a0f0f68dca99365bb3e48">project_momenta</a> (<span class="keywordtype">int</span> lev, <a class="code" href="namespaceamrex.html">amrex</a>::<a class="code" href="ERF__ShocInterface_8H.html#ab8a9d2a7cbf2084043f890c3d0a68f57">Real</a> l_time, <a class="code" href="namespaceamrex.html">amrex</a>::<a class="code" href="ERF__ShocInterface_8H.html#ab8a9d2a7cbf2084043f890c3d0a68f57">Real</a> l_dt, <a class="code" href="namespaceamrex.html">amrex</a>::Vector<<a class="code" href="namespaceamrex.html">amrex</a>::MultiFab >& vars);</div>
<div class="line"><a name="l00203"></a><span class="lineno"> 203</span>  </div>
<div class="line"><a name="l00204"></a><span class="lineno"> 204</span>  <span class="comment">// Project the velocities to be divergence-free with a thin body</span></div>
<div class="line"><a name="l00205"></a><span class="lineno"> 205</span>  <span class="keywordtype">void</span> <a class="code" href="classERF.html#a2f36ab3750aa760fb621b40294e0f6c6">project_velocity_tb</a> (<span class="keywordtype">int</span> lev, <a class="code" href="namespaceamrex.html">amrex</a>::<a class="code" href="ERF__ShocInterface_8H.html#ab8a9d2a7cbf2084043f890c3d0a68f57">Real</a> <a class="code" href="classERF.html#ad34bae243fdb6c3029f5abe4fb4bca2d">dt</a>, <a class="code" href="namespaceamrex.html">amrex</a>::Vector<<a class="code" href="namespaceamrex.html">amrex</a>::MultiFab >& vars);</div>
<div class="line"><a name="l00206"></a><span class="lineno"> 206</span>  </div>
<div class="line"><a name="l00207"></a><span class="lineno"> 207</span>  <span class="comment">// Calculate wall distance by solving a Poisson equation</span></div>
<div class="line"><a name="l00208"></a><span class="lineno"> 208</span>  <span class="keywordtype">void</span> <a class="code" href="classERF.html#a984c145a81739ab4c7f8fd03a334d239">poisson_wall_dist</a> (<span class="keywordtype">int</span> lev);</div>
<div class="line"><a name="l00209"></a><span class="lineno"> 209</span>  </div>
<div class="line"><a name="l00210"></a><span class="lineno"> 210</span>  <span class="keywordtype">void</span> <a class="code" href="classERF.html#a7567528ba42339cf237e11617453eb5f">make_subdomains</a>(const <a class="code" href="namespaceamrex.html">amrex</a>::BoxList& ba, <a class="code" href="namespaceamrex.html">amrex</a>::Vector<<a class="code" href="namespaceamrex.html">amrex</a>::BoxArray>& bins);</div>
<div class="line"><a name="l00211"></a><span class="lineno"> 211</span>  </div>
<div class="line"><a name="l00212"></a><span class="lineno"> 212</span> <span class="preprocessor">#ifdef ERF_USE_FFT</span></div>
<div class="line"><a name="l00213"></a><span class="lineno"> 213</span>  <span class="keywordtype">void</span> solve_with_fft (<span class="keywordtype">int</span> lev, <span class="keyword">const</span> amrex::Box& subdomain,</div>
<div class="line"><a name="l00214"></a><span class="lineno"> 214</span>  amrex::MultiFab& rhs, amrex::MultiFab& <a class="code" href="ERF__InitCustomPert__SquallLine_8H.html#af83c1918e681461dc4cc7ed4c0828b2c">p</a>,</div>
<div class="line"><a name="l00215"></a><span class="lineno"> 215</span>  amrex::Array<amrex::MultiFab,AMREX_SPACEDIM>& fluxes);</div>
<div class="line"><a name="l00216"></a><span class="lineno"> 216</span> <span class="preprocessor">#endif</span></div>
<div class="line"><a name="l00217"></a><span class="lineno"> 217</span>  <span class="keywordtype">void</span> <a class="code" href="classERF.html#a3b68b5272f89529e97680b891314e084">solve_with_gmres</a> (<span class="keywordtype">int</span> lev, <span class="keyword">const</span> amrex::Box& subdomain,</div>
<div class="line"><a name="l00218"></a><span class="lineno"> 218</span>  amrex::MultiFab& rhs, amrex::MultiFab& <a class="code" href="ERF__InitCustomPert__SquallLine_8H.html#af83c1918e681461dc4cc7ed4c0828b2c">p</a>,</div>
<div class="line"><a name="l00219"></a><span class="lineno"> 219</span>  amrex::Array<amrex::MultiFab,AMREX_SPACEDIM>& fluxes,</div>
<div class="line"><a name="l00220"></a><span class="lineno"> 220</span>  amrex::MultiFab& ax_sub, amrex::MultiFab& ay_sub,</div>
<div class="line"><a name="l00221"></a><span class="lineno"> 221</span>  amrex::MultiFab& az_sub,</div>
<div class="line"><a name="l00222"></a><span class="lineno"> 222</span>  amrex::MultiFab& <span class="comment">/*dJ_sub*/</span>, amrex::MultiFab& znd_sub);</div>
<div class="line"><a name="l00223"></a><span class="lineno"> 223</span>  </div>
<div class="line"><a name="l00224"></a><span class="lineno"> 224</span>  <span class="keywordtype">void</span> <a class="code" href="classERF.html#ac3a76da346ff580389d3ab81679d3807">ImposeBCsOnPhi</a> (<span class="keywordtype">int</span> lev, amrex::MultiFab& phi, <span class="keyword">const</span> amrex::Box& subdomain);</div>
<div class="line"><a name="l00225"></a><span class="lineno"> 225</span>  </div>
<div class="line"><a name="l00226"></a><span class="lineno"> 226</span>  <span class="comment">// Init (NOT restart or regrid)</span></div>
<div class="line"><a name="l00227"></a><span class="lineno"> 227</span>  <span class="keywordtype">void</span> <a class="code" href="classERF.html#a80981e20939a6a38ba17478da2253ff1">init_only</a> (<span class="keywordtype">int</span> lev, <a class="code" href="ERF__ShocInterface_8H.html#ab8a9d2a7cbf2084043f890c3d0a68f57">amrex::Real</a> time);</div>
<div class="line"><a name="l00228"></a><span class="lineno"> 228</span>  </div>
<div class="line"><a name="l00229"></a><span class="lineno"> 229</span>  <span class="comment">// Restart</span></div>
<div class="line"><a name="l00230"></a><span class="lineno"> 230</span>  <span class="keywordtype">void</span> <a class="code" href="classERF.html#a530d2ce59e6fd46e9fb00e4d11eaf737">restart</a> ();</div>
<div class="line"><a name="l00231"></a><span class="lineno"> 231</span>  </div>
<div class="line"><a name="l00232"></a><span class="lineno"> 232</span>  <span class="comment">// Check for NaNs and other bad stuff</span></div>
<div class="line"><a name="l00233"></a><span class="lineno"> 233</span>  <span class="keywordtype">void</span> <a class="code" href="classERF.html#a8dff955c86d8e0c2e4ed81c045440f85">check_state_for_nans</a>(amrex::MultiFab <span class="keyword">const</span>& S);</div>
<div class="line"><a name="l00234"></a><span class="lineno"> 234</span>  <span class="keywordtype">void</span> <a class="code" href="classERF.html#a0b24b45ed078134ee80c1d32fa5e36bc">check_vels_for_nans</a>(amrex::MultiFab <span class="keyword">const</span>& <a class="code" href="namespaceVars.html#abe828d925ca6d1854b33e0aa386344afa2a10a6e726515894b07621908abd4c0c">xvel</a>, amrex::MultiFab <span class="keyword">const</span>& <a class="code" href="namespaceVars.html#abe828d925ca6d1854b33e0aa386344afa81793b83204cfa56d4683bc676fbbfb6">yvel</a>, amrex::MultiFab <span class="keyword">const</span>& <a class="code" href="namespaceVars.html#abe828d925ca6d1854b33e0aa386344afa48ee63b17bc216e9661511c33c68bd8b">zvel</a>);</div>
<div class="line"><a name="l00235"></a><span class="lineno"> 235</span>  <span class="keywordtype">void</span> <a class="code" href="classERF.html#ac34d3f6d37f22f6fa9d909969da990b7">check_for_negative_theta</a> (amrex::MultiFab& S);</div>
<div class="line"><a name="l00236"></a><span class="lineno"> 236</span>  <span class="keywordtype">void</span> <a class="code" href="classERF.html#ab3017f06be0feef9e853d4b68158c6a7">check_for_low_temp</a> (amrex::MultiFab& S);</div>
<div class="line"><a name="l00237"></a><span class="lineno"> 237</span>  </div>
<div class="line"><a name="l00238"></a><span class="lineno"> 238</span>  <span class="comment">// Is it time to write a plotfile or checkpoint?</span></div>
<div class="line"><a name="l00239"></a><span class="lineno"> 239</span>  <span class="keywordtype">bool</span> <a class="code" href="classERF.html#acdd90b6ca46cd3dcf245e038fffbc980">writeNow</a> (<span class="keyword">const</span> <a class="code" href="ERF__ShocInterface_8H.html#ab8a9d2a7cbf2084043f890c3d0a68f57">amrex::Real</a> cur_time, <span class="keyword">const</span> <span class="keywordtype">int</span> nstep, <span class="keyword">const</span> <span class="keywordtype">int</span> plot_int,</div>
<div class="line"><a name="l00240"></a><span class="lineno"> 240</span>  <span class="keyword">const</span> <a class="code" href="ERF__ShocInterface_8H.html#ab8a9d2a7cbf2084043f890c3d0a68f57">amrex::Real</a> plot_per, <span class="keyword">const</span> <a class="code" href="ERF__ShocInterface_8H.html#ab8a9d2a7cbf2084043f890c3d0a68f57">amrex::Real</a> dt_0, <a class="code" href="ERF__ShocInterface_8H.html#ab8a9d2a7cbf2084043f890c3d0a68f57">amrex::Real</a>& last_file_time);</div>
<div class="line"><a name="l00241"></a><span class="lineno"> 241</span>  </div>
<div class="line"><a name="l00242"></a><span class="lineno"> 242</span>  <span class="comment">// Called after every level 0 timestep</span></div>
<div class="line"><a name="l00243"></a><span class="lineno"> 243</span>  <span class="keywordtype">void</span> <a class="code" href="classERF.html#a58f6683aff0fbe6949bfe8b49275a8b3">post_timestep</a> (<span class="keywordtype">int</span> nstep, <a class="code" href="ERF__ShocInterface_8H.html#ab8a9d2a7cbf2084043f890c3d0a68f57">amrex::Real</a> time, <a class="code" href="ERF__ShocInterface_8H.html#ab8a9d2a7cbf2084043f890c3d0a68f57">amrex::Real</a> dt_lev);</div>
<div class="line"><a name="l00244"></a><span class="lineno"> 244</span>  </div>
<div class="line"><a name="l00245"></a><span class="lineno"> 245</span>  <span class="comment">// Diagnostics</span></div>
<div class="line"><a name="l00246"></a><span class="lineno"> 246</span>  <span class="keywordtype">void</span> <a class="code" href="classERF.html#a922892a05ee0c5bccd210a3e5a8599e1">sum_integrated_quantities</a> (<a class="code" href="ERF__ShocInterface_8H.html#ab8a9d2a7cbf2084043f890c3d0a68f57">amrex::Real</a> time);</div>
<div class="line"><a name="l00247"></a><span class="lineno"> 247</span>  <span class="keywordtype">void</span> <a class="code" href="classERF.html#a91c184ac7e5889fe785aa846112ce2e6">sum_derived_quantities</a> (<a class="code" href="ERF__ShocInterface_8H.html#ab8a9d2a7cbf2084043f890c3d0a68f57">amrex::Real</a> time);</div>
<div class="line"><a name="l00248"></a><span class="lineno"> 248</span>  <span class="keywordtype">void</span> <a class="code" href="classERF.html#a3e5b26e9aeb49e5318eb6cb68ed2ee97">sum_energy_quantities</a> (<a class="code" href="ERF__ShocInterface_8H.html#ab8a9d2a7cbf2084043f890c3d0a68f57">amrex::Real</a> time);</div>
<div class="line"><a name="l00249"></a><span class="lineno"> 249</span>  </div>
<div class="line"><a name="l00250"></a><span class="lineno"> 250</span>  <span class="keywordtype">void</span> <a class="code" href="classERF.html#a55eae94c5363e227b571739738bb26b7">write_1D_profiles</a> (<a class="code" href="ERF__ShocInterface_8H.html#ab8a9d2a7cbf2084043f890c3d0a68f57">amrex::Real</a> time);</div>
<div class="line"><a name="l00251"></a><span class="lineno"> 251</span>  <span class="keywordtype">void</span> <a class="code" href="classERF.html#a39efa3a0f3ae3deb7a43f4ce110ee49a">write_1D_profiles_stag</a> (<a class="code" href="ERF__ShocInterface_8H.html#ab8a9d2a7cbf2084043f890c3d0a68f57">amrex::Real</a> time);</div>
<div class="line"><a name="l00252"></a><span class="lineno"> 252</span>  </div>
<div class="line"><a name="l00253"></a><span class="lineno"> 253</span>  <a class="code" href="ERF__ShocInterface_8H.html#ab8a9d2a7cbf2084043f890c3d0a68f57">amrex::Real</a> <a class="code" href="classERF.html#a0f6effb7eeed11385b20e4bbf516b459">cloud_fraction</a> (<a class="code" href="ERF__ShocInterface_8H.html#ab8a9d2a7cbf2084043f890c3d0a68f57">amrex::Real</a> time);</div>
<div class="line"><a name="l00254"></a><span class="lineno"> 254</span>  </div>
<div class="line"><a name="l00255"></a><span class="lineno"> 255</span>  <span class="comment">// Fill the physical boundary conditions for cell-centered velocity (diagnostic only)</span></div>
<div class="line"><a name="l00256"></a><span class="lineno"> 256</span>  <span class="keywordtype">void</span> <a class="code" href="classERF.html#a0857fa7f21e3077bb8bd7808023a6d09">FillBdyCCVels</a> (amrex::Vector<amrex::MultiFab>& mf_cc_vel, <span class="keywordtype">int</span> levc=0);</div>
<div class="line"><a name="l00257"></a><span class="lineno"> 257</span>  </div>
<div class="line"><a name="l00258"></a><span class="lineno"> 258</span>  <span class="keywordtype">void</span> <a class="code" href="classERF.html#aa28182226262c67cfd686d35bfeabcad">sample_points</a> (<span class="keywordtype">int</span> lev, <a class="code" href="ERF__ShocInterface_8H.html#ab8a9d2a7cbf2084043f890c3d0a68f57">amrex::Real</a> time, amrex::IntVect cell, amrex::MultiFab& mf);</div>
<div class="line"><a name="l00259"></a><span class="lineno"> 259</span>  <span class="keywordtype">void</span> <a class="code" href="classERF.html#afb798c72ea4fde6f4da8d01a24c8c165">sample_lines</a> (<span class="keywordtype">int</span> lev, <a class="code" href="ERF__ShocInterface_8H.html#ab8a9d2a7cbf2084043f890c3d0a68f57">amrex::Real</a> time, amrex::IntVect cell, amrex::MultiFab& mf);</div>
<div class="line"><a name="l00260"></a><span class="lineno"> 260</span>  </div>
<div class="line"><a name="l00261"></a><span class="lineno"> 261</span>  <span class="keywordtype">void</span> <a class="code" href="classERF.html#ab5b66549344d8b04b126fa0ef16c7ca2">derive_diag_profiles</a> (<a class="code" href="ERF__ShocInterface_8H.html#ab8a9d2a7cbf2084043f890c3d0a68f57">amrex::Real</a> time,</div>
<div class="line"><a name="l00262"></a><span class="lineno"> 262</span>  amrex::Gpu::HostVector<amrex::Real>& h_avg_u , amrex::Gpu::HostVector<amrex::Real>& h_avg_v,</div>
<div class="line"><a name="l00263"></a><span class="lineno"> 263</span>  amrex::Gpu::HostVector<amrex::Real>& h_avg_w , amrex::Gpu::HostVector<amrex::Real>& h_avg_rho,</div>
<div class="line"><a name="l00264"></a><span class="lineno"> 264</span>  amrex::Gpu::HostVector<amrex::Real>& h_avg_th , amrex::Gpu::HostVector<amrex::Real>& h_avg_ksgs,</div>
<div class="line"><a name="l00265"></a><span class="lineno"> 265</span>  amrex::Gpu::HostVector<amrex::Real>& h_avg_Kmv , amrex::Gpu::HostVector<amrex::Real>& h_avg_Khv,</div>
<div class="line"><a name="l00266"></a><span class="lineno"> 266</span>  amrex::Gpu::HostVector<amrex::Real>& h_avg_qv , amrex::Gpu::HostVector<amrex::Real>& h_avg_qc,</div>
<div class="line"><a name="l00267"></a><span class="lineno"> 267</span>  amrex::Gpu::HostVector<amrex::Real>& h_avg_qr ,</div>
<div class="line"><a name="l00268"></a><span class="lineno"> 268</span>  amrex::Gpu::HostVector<amrex::Real>& h_avg_wqv , amrex::Gpu::HostVector<amrex::Real>& h_avg_wqc,</div>
<div class="line"><a name="l00269"></a><span class="lineno"> 269</span>  amrex::Gpu::HostVector<amrex::Real>& h_avg_wqr ,</div>
<div class="line"><a name="l00270"></a><span class="lineno"> 270</span>  amrex::Gpu::HostVector<amrex::Real>& h_avg_qi , amrex::Gpu::HostVector<amrex::Real>& h_avg_qs,</div>
<div class="line"><a name="l00271"></a><span class="lineno"> 271</span>  amrex::Gpu::HostVector<amrex::Real>& h_avg_qg ,</div>
<div class="line"><a name="l00272"></a><span class="lineno"> 272</span>  amrex::Gpu::HostVector<amrex::Real>& h_avg_uu , amrex::Gpu::HostVector<amrex::Real>& h_avg_uv,</div>
<div class="line"><a name="l00273"></a><span class="lineno"> 273</span>  amrex::Gpu::HostVector<amrex::Real>& h_avg_uw,</div>
<div class="line"><a name="l00274"></a><span class="lineno"> 274</span>  amrex::Gpu::HostVector<amrex::Real>& h_avg_vv , amrex::Gpu::HostVector<amrex::Real>& h_avg_vw,</div>
<div class="line"><a name="l00275"></a><span class="lineno"> 275</span>  amrex::Gpu::HostVector<amrex::Real>& h_avg_ww,</div>
<div class="line"><a name="l00276"></a><span class="lineno"> 276</span>  amrex::Gpu::HostVector<amrex::Real>& h_avg_uth , amrex::Gpu::HostVector<amrex::Real>& h_avg_vth,</div>
<div class="line"><a name="l00277"></a><span class="lineno"> 277</span>  amrex::Gpu::HostVector<amrex::Real>& h_avg_wth, amrex::Gpu::HostVector<amrex::Real>& h_avg_thth,</div>
<div class="line"><a name="l00278"></a><span class="lineno"> 278</span>  amrex::Gpu::HostVector<amrex::Real>& h_avg_ku, amrex::Gpu::HostVector<amrex::Real>& h_avg_kv,</div>
<div class="line"><a name="l00279"></a><span class="lineno"> 279</span>  amrex::Gpu::HostVector<amrex::Real>& h_avg_kw,</div>
<div class="line"><a name="l00280"></a><span class="lineno"> 280</span>  amrex::Gpu::HostVector<amrex::Real>& h_avg_p,</div>
<div class="line"><a name="l00281"></a><span class="lineno"> 281</span>  amrex::Gpu::HostVector<amrex::Real>& h_avg_pu, amrex::Gpu::HostVector<amrex::Real>& h_avg_pv,</div>
<div class="line"><a name="l00282"></a><span class="lineno"> 282</span>  amrex::Gpu::HostVector<amrex::Real>& h_avg_pw, amrex::Gpu::HostVector<amrex::Real>& h_avg_wthv);</div>
<div class="line"><a name="l00283"></a><span class="lineno"> 283</span>  <span class="keywordtype">void</span> <a class="code" href="classERF.html#a8b93b715895b00e86e7db653d2a7284a">derive_diag_profiles_stag</a> (<a class="code" href="ERF__ShocInterface_8H.html#ab8a9d2a7cbf2084043f890c3d0a68f57">amrex::Real</a> time,</div>
<div class="line"><a name="l00284"></a><span class="lineno"> 284</span>  amrex::Gpu::HostVector<amrex::Real>& h_avg_u , amrex::Gpu::HostVector<amrex::Real>& h_avg_v,</div>
<div class="line"><a name="l00285"></a><span class="lineno"> 285</span>  amrex::Gpu::HostVector<amrex::Real>& h_avg_w , amrex::Gpu::HostVector<amrex::Real>& h_avg_rho,</div>
<div class="line"><a name="l00286"></a><span class="lineno"> 286</span>  amrex::Gpu::HostVector<amrex::Real>& h_avg_th , amrex::Gpu::HostVector<amrex::Real>& h_avg_ksgs,</div>
<div class="line"><a name="l00287"></a><span class="lineno"> 287</span>  amrex::Gpu::HostVector<amrex::Real>& h_avg_Kmv , amrex::Gpu::HostVector<amrex::Real>& h_avg_Khv,</div>
<div class="line"><a name="l00288"></a><span class="lineno"> 288</span>  amrex::Gpu::HostVector<amrex::Real>& h_avg_qv , amrex::Gpu::HostVector<amrex::Real>& h_avg_qc,</div>
<div class="line"><a name="l00289"></a><span class="lineno"> 289</span>  amrex::Gpu::HostVector<amrex::Real>& h_avg_qr ,</div>
<div class="line"><a name="l00290"></a><span class="lineno"> 290</span>  amrex::Gpu::HostVector<amrex::Real>& h_avg_wqv , amrex::Gpu::HostVector<amrex::Real>& h_avg_wqc,</div>
<div class="line"><a name="l00291"></a><span class="lineno"> 291</span>  amrex::Gpu::HostVector<amrex::Real>& h_avg_wqr ,</div>
<div class="line"><a name="l00292"></a><span class="lineno"> 292</span>  amrex::Gpu::HostVector<amrex::Real>& h_avg_qi , amrex::Gpu::HostVector<amrex::Real>& h_avg_qs,</div>
<div class="line"><a name="l00293"></a><span class="lineno"> 293</span>  amrex::Gpu::HostVector<amrex::Real>& h_avg_qg ,</div>
<div class="line"><a name="l00294"></a><span class="lineno"> 294</span>  amrex::Gpu::HostVector<amrex::Real>& h_avg_uu , amrex::Gpu::HostVector<amrex::Real>& h_avg_uv,</div>
<div class="line"><a name="l00295"></a><span class="lineno"> 295</span>  amrex::Gpu::HostVector<amrex::Real>& h_avg_uw,</div>
<div class="line"><a name="l00296"></a><span class="lineno"> 296</span>  amrex::Gpu::HostVector<amrex::Real>& h_avg_vv , amrex::Gpu::HostVector<amrex::Real>& h_avg_vw,</div>
<div class="line"><a name="l00297"></a><span class="lineno"> 297</span>  amrex::Gpu::HostVector<amrex::Real>& h_avg_ww,</div>
<div class="line"><a name="l00298"></a><span class="lineno"> 298</span>  amrex::Gpu::HostVector<amrex::Real>& h_avg_uth , amrex::Gpu::HostVector<amrex::Real>& h_avg_vth,</div>
<div class="line"><a name="l00299"></a><span class="lineno"> 299</span>  amrex::Gpu::HostVector<amrex::Real>& h_avg_wth, amrex::Gpu::HostVector<amrex::Real>& h_avg_thth,</div>
<div class="line"><a name="l00300"></a><span class="lineno"> 300</span>  amrex::Gpu::HostVector<amrex::Real>& h_avg_ku, amrex::Gpu::HostVector<amrex::Real>& h_avg_kv,</div>
<div class="line"><a name="l00301"></a><span class="lineno"> 301</span>  amrex::Gpu::HostVector<amrex::Real>& h_avg_kw,</div>
<div class="line"><a name="l00302"></a><span class="lineno"> 302</span>  amrex::Gpu::HostVector<amrex::Real>& h_avg_p,</div>
<div class="line"><a name="l00303"></a><span class="lineno"> 303</span>  amrex::Gpu::HostVector<amrex::Real>& h_avg_pu, amrex::Gpu::HostVector<amrex::Real>& h_avg_pv,</div>
<div class="line"><a name="l00304"></a><span class="lineno"> 304</span>  amrex::Gpu::HostVector<amrex::Real>& h_avg_pw, amrex::Gpu::HostVector<amrex::Real>& h_avg_wthv);</div>
<div class="line"><a name="l00305"></a><span class="lineno"> 305</span>  </div>
<div class="line"><a name="l00306"></a><span class="lineno"> 306</span>  <span class="keywordtype">void</span> <a class="code" href="classERF.html#ad7886dcab90f37a8fcc91ede0c68b6cb">derive_stress_profiles</a> (amrex::Gpu::HostVector<amrex::Real>& h_avg_tau11, amrex::Gpu::HostVector<amrex::Real>& h_avg_tau12,</div>
<div class="line"><a name="l00307"></a><span class="lineno"> 307</span>  amrex::Gpu::HostVector<amrex::Real>& h_avg_tau13, amrex::Gpu::HostVector<amrex::Real>& h_avg_tau22,</div>
<div class="line"><a name="l00308"></a><span class="lineno"> 308</span>  amrex::Gpu::HostVector<amrex::Real>& h_avg_tau23, amrex::Gpu::HostVector<amrex::Real>& h_avg_tau33,</div>
<div class="line"><a name="l00309"></a><span class="lineno"> 309</span>  amrex::Gpu::HostVector<amrex::Real>& h_avg_hfx3, amrex::Gpu::HostVector<amrex::Real>& h_avg_q1fx3,</div>
<div class="line"><a name="l00310"></a><span class="lineno"> 310</span>  amrex::Gpu::HostVector<amrex::Real>& h_avg_q2fx3, amrex::Gpu::HostVector<amrex::Real>& h_avg_diss);</div>
<div class="line"><a name="l00311"></a><span class="lineno"> 311</span>  <span class="keywordtype">void</span> <a class="code" href="classERF.html#ae09680325ba108583147eb2e254a266e">derive_stress_profiles_stag</a> (amrex::Gpu::HostVector<amrex::Real>& h_avg_tau11, amrex::Gpu::HostVector<amrex::Real>& h_avg_tau12,</div>
<div class="line"><a name="l00312"></a><span class="lineno"> 312</span>  amrex::Gpu::HostVector<amrex::Real>& h_avg_tau13, amrex::Gpu::HostVector<amrex::Real>& h_avg_tau22,</div>
<div class="line"><a name="l00313"></a><span class="lineno"> 313</span>  amrex::Gpu::HostVector<amrex::Real>& h_avg_tau23, amrex::Gpu::HostVector<amrex::Real>& h_avg_tau33,</div>
<div class="line"><a name="l00314"></a><span class="lineno"> 314</span>  amrex::Gpu::HostVector<amrex::Real>& h_avg_hfx3, amrex::Gpu::HostVector<amrex::Real>& h_avg_q1fx3,</div>
<div class="line"><a name="l00315"></a><span class="lineno"> 315</span>  amrex::Gpu::HostVector<amrex::Real>& h_avg_q2fx3, amrex::Gpu::HostVector<amrex::Real>& h_avg_diss);</div>
<div class="line"><a name="l00316"></a><span class="lineno"> 316</span>  </div>
<div class="line"><a name="l00317"></a><span class="lineno"> 317</span>  <span class="comment">// Perform the volume-weighted sum</span></div>
<div class="line"><a name="l00318"></a><span class="lineno"> 318</span>  <a class="code" href="ERF__ShocInterface_8H.html#ab8a9d2a7cbf2084043f890c3d0a68f57">amrex::Real</a></div>
<div class="line"><a name="l00319"></a><span class="lineno"> 319</span>  <a class="code" href="classERF.html#a95d6b706cdf0192a149b5f1aa3239800">volWgtSumMF</a> (<span class="keywordtype">int</span> lev, <span class="keyword">const</span> amrex::MultiFab& mf, <span class="keywordtype">int</span> comp,</div>
<div class="line"><a name="l00320"></a><span class="lineno"> 320</span>  <span class="keyword">const</span> amrex::MultiFab& dJ, <span class="keyword">const</span> amrex::MultiFab& mfx, <span class="keyword">const</span> amrex::MultiFab& mfy,</div>
<div class="line"><a name="l00321"></a><span class="lineno"> 321</span>  <span class="keywordtype">bool</span> finemask, <span class="keywordtype">bool</span> local = <span class="keyword">true</span>);</div>
<div class="line"><a name="l00322"></a><span class="lineno"> 322</span>  </div>
<div class="line"><a name="l00323"></a><span class="lineno"> 323</span>  <span class="keywordtype">void</span></div>
<div class="line"><a name="l00324"></a><span class="lineno"> 324</span>  <a class="code" href="classERF.html#a1b601757b2d24225cf9e7980e9a16c51">volWgtColumnSum</a> (<span class="keywordtype">int</span> lev, <span class="keyword">const</span> amrex::MultiFab& mf, <span class="keywordtype">int</span> comp,</div>
<div class="line"><a name="l00325"></a><span class="lineno"> 325</span>  amrex::MultiFab& mf_2d, <span class="keyword">const</span> amrex::MultiFab& dJ);</div>
<div class="line"><a name="l00326"></a><span class="lineno"> 326</span>  </div>
<div class="line"><a name="l00327"></a><span class="lineno"> 327</span>  <span class="comment">// Decide if it is time to take an action</span></div>
<div class="line"><a name="l00328"></a><span class="lineno"> 328</span>  <span class="keyword">static</span> <span class="keywordtype">bool</span> <a class="code" href="classERF.html#ad4c61fad53912d1e8d0f774d365bcf0f">is_it_time_for_action</a> (<span class="keywordtype">int</span> nstep, <a class="code" href="ERF__ShocInterface_8H.html#ab8a9d2a7cbf2084043f890c3d0a68f57">amrex::Real</a> time, <a class="code" href="ERF__ShocInterface_8H.html#ab8a9d2a7cbf2084043f890c3d0a68f57">amrex::Real</a> <a class="code" href="classERF.html#ad34bae243fdb6c3029f5abe4fb4bca2d">dt</a>,</div>
<div class="line"><a name="l00329"></a><span class="lineno"> 329</span>  <span class="keywordtype">int</span> action_interval, <a class="code" href="ERF__ShocInterface_8H.html#ab8a9d2a7cbf2084043f890c3d0a68f57">amrex::Real</a> action_per);</div>
<div class="line"><a name="l00330"></a><span class="lineno"> 330</span>  </div>
<div class="line"><a name="l00331"></a><span class="lineno"> 331</span>  <span class="comment">// Make a new level using provided BoxArray and DistributionMapping and</span></div>
<div class="line"><a name="l00332"></a><span class="lineno"> 332</span>  <span class="comment">// fill with interpolated coarse level data.</span></div>
<div class="line"><a name="l00333"></a><span class="lineno"> 333</span>  <span class="comment">// overrides the pure virtual function in AmrCore</span></div>
<div class="line"><a name="l00334"></a><span class="lineno"> 334</span>  <span class="keywordtype">void</span> <a class="code" href="classERF.html#abb6175c28b36d23f5dda2994ca4a85e7">MakeNewLevelFromCoarse</a> (<span class="keywordtype">int</span> lev, <a class="code" href="ERF__ShocInterface_8H.html#ab8a9d2a7cbf2084043f890c3d0a68f57">amrex::Real</a> time, <span class="keyword">const</span> amrex::BoxArray& ba,</div>
<div class="line"><a name="l00335"></a><span class="lineno"> 335</span>  <span class="keyword">const</span> amrex::DistributionMapping& dm) <span class="keyword">override</span>;</div>
<div class="line"><a name="l00336"></a><span class="lineno"> 336</span>  </div>
<div class="line"><a name="l00337"></a><span class="lineno"> 337</span>  <span class="comment">// Remake an existing level using provided BoxArray and DistributionMapping and</span></div>
<div class="line"><a name="l00338"></a><span class="lineno"> 338</span>  <span class="comment">// fill with existing fine and coarse data.</span></div>
<div class="line"><a name="l00339"></a><span class="lineno"> 339</span>  <span class="comment">// overrides the pure virtual function in AmrCore</span></div>
<div class="line"><a name="l00340"></a><span class="lineno"> 340</span>  <span class="keywordtype">void</span> <a class="code" href="classERF.html#aae7a3a76e08e54c618cf79b30ed2d73d">RemakeLevel</a> (<span class="keywordtype">int</span> lev, <a class="code" href="ERF__ShocInterface_8H.html#ab8a9d2a7cbf2084043f890c3d0a68f57">amrex::Real</a> time, <span class="keyword">const</span> amrex::BoxArray& ba,</div>
<div class="line"><a name="l00341"></a><span class="lineno"> 341</span>  <span class="keyword">const</span> amrex::DistributionMapping& dm) <span class="keyword">override</span>;</div>
<div class="line"><a name="l00342"></a><span class="lineno"> 342</span>  </div>
<div class="line"><a name="l00343"></a><span class="lineno"> 343</span>  <span class="comment">// Delete level data</span></div>
<div class="line"><a name="l00344"></a><span class="lineno"> 344</span>  <span class="comment">// overrides the pure virtual function in AmrCore</span></div>
<div class="line"><a name="l00345"></a><span class="lineno"> 345</span>  <span class="keywordtype">void</span> <a class="code" href="classERF.html#ac44e400a7ce68e18fa44e9416cb1344e">ClearLevel</a> (<span class="keywordtype">int</span> lev) <span class="keyword">override</span>;</div>
<div class="line"><a name="l00346"></a><span class="lineno"> 346</span>  </div>
<div class="line"><a name="l00347"></a><span class="lineno"> 347</span>  <span class="comment">// Make a new level from scratch using provided BoxArray and DistributionMapping.</span></div>
<div class="line"><a name="l00348"></a><span class="lineno"> 348</span>  <span class="comment">// Only used during initialization.</span></div>
<div class="line"><a name="l00349"></a><span class="lineno"> 349</span>  <span class="comment">// overrides the pure virtual function in AmrCore</span></div>
<div class="line"><a name="l00350"></a><span class="lineno"> 350</span>  <span class="keywordtype">void</span> <a class="code" href="classERF.html#aaf10bbf8c9a5dbc257a88c4c1b650fee">MakeNewLevelFromScratch</a> (<span class="keywordtype">int</span> lev, <a class="code" href="ERF__ShocInterface_8H.html#ab8a9d2a7cbf2084043f890c3d0a68f57">amrex::Real</a> time, <span class="keyword">const</span> amrex::BoxArray& ba,</div>
<div class="line"><a name="l00351"></a><span class="lineno"> 351</span>  <span class="keyword">const</span> amrex::DistributionMapping& dm) <span class="keyword">override</span>;</div>
<div class="line"><a name="l00352"></a><span class="lineno"> 352</span>  </div>
<div class="line"><a name="l00353"></a><span class="lineno"> 353</span>  <span class="comment">// compute dt from CFL considerations</span></div>
<div class="line"><a name="l00354"></a><span class="lineno"> 354</span>  <a class="code" href="ERF__ShocInterface_8H.html#ab8a9d2a7cbf2084043f890c3d0a68f57">amrex::Real</a> <a class="code" href="classERF.html#a6b1d727e63de2e49aa4f8e00b0dda1d5">estTimeStep</a> (<span class="keywordtype">int</span> lev, <span class="keywordtype">long</span>& dt_fast_ratio) <span class="keyword">const</span>;</div>
<div class="line"><a name="l00355"></a><span class="lineno"> 355</span>  </div>
<div class="line"><a name="l00356"></a><span class="lineno"> 356</span> <span class="preprocessor">#ifdef ERF_USE_WW3_COUPLING</span></div>
<div class="line"><a name="l00357"></a><span class="lineno"> 357</span>  <span class="comment">//amrex::Print() << " About to call send_to_ww3 from ERF.H" << std::endl;</span></div>
<div class="line"><a name="l00358"></a><span class="lineno"> 358</span>  <span class="keywordtype">void</span> send_to_ww3(<span class="keywordtype">int</span> lev);</div>
<div class="line"><a name="l00359"></a><span class="lineno"> 359</span>  <span class="comment">//amrex::Print() << " About to call read_waves from ERF.H" << std::endl;</span></div>
<div class="line"><a name="l00360"></a><span class="lineno"> 360</span>  <span class="keywordtype">void</span> read_waves(<span class="keywordtype">int</span> lev);</div>
<div class="line"><a name="l00361"></a><span class="lineno"> 361</span>  <span class="comment">//void send_to_ww3 (int lev);</span></div>
<div class="line"><a name="l00362"></a><span class="lineno"> 362</span>  <span class="comment">//void read_waves (int lev);</span></div>
<div class="line"><a name="l00363"></a><span class="lineno"> 363</span>  </div>
<div class="line"><a name="l00364"></a><span class="lineno"> 364</span>  <span class="comment">//void send_to_ww3 (int lev);</span></div>
<div class="line"><a name="l00365"></a><span class="lineno"> 365</span> <span class="preprocessor">#endif</span></div>
<div class="line"><a name="l00366"></a><span class="lineno"> 366</span>  </div>
<div class="line"><a name="l00367"></a><span class="lineno"> 367</span>  <span class="comment">// Interface for advancing the data at one level by one "slow" timestep</span></div>
<div class="line"><a name="l00368"></a><span class="lineno"> 368</span>  <span class="keywordtype">void</span> <a class="code" href="classERF.html#a96a272defae485c5b83fbc123a631f9f">advance_dycore</a> (<span class="keywordtype">int</span> level,</div>
<div class="line"><a name="l00369"></a><span class="lineno"> 369</span>  amrex::Vector<amrex::MultiFab>& state_old,</div>
<div class="line"><a name="l00370"></a><span class="lineno"> 370</span>  amrex::Vector<amrex::MultiFab>& state_new,</div>
<div class="line"><a name="l00371"></a><span class="lineno"> 371</span>  amrex::MultiFab& xvel_old, amrex::MultiFab& yvel_old, amrex::MultiFab& zvel_old,</div>
<div class="line"><a name="l00372"></a><span class="lineno"> 372</span>  amrex::MultiFab& xvel_new, amrex::MultiFab& yvel_new, amrex::MultiFab& zvel_new,</div>
<div class="line"><a name="l00373"></a><span class="lineno"> 373</span>  amrex::MultiFab& source, amrex::MultiFab& xmom_src,</div>
<div class="line"><a name="l00374"></a><span class="lineno"> 374</span>  amrex::MultiFab& ymom_src, amrex::MultiFab& zmom_src,</div>
<div class="line"><a name="l00375"></a><span class="lineno"> 375</span>  amrex::MultiFab& buoyancy, amrex::Geometry fine_geom,</div>
<div class="line"><a name="l00376"></a><span class="lineno"> 376</span>  <a class="code" href="ERF__ShocInterface_8H.html#ab8a9d2a7cbf2084043f890c3d0a68f57">amrex::Real</a> <a class="code" href="classERF.html#ad34bae243fdb6c3029f5abe4fb4bca2d">dt</a>, <a class="code" href="ERF__ShocInterface_8H.html#ab8a9d2a7cbf2084043f890c3d0a68f57">amrex::Real</a> time);</div>
<div class="line"><a name="l00377"></a><span class="lineno"> 377</span>  </div>
<div class="line"><a name="l00378"></a><span class="lineno"> 378</span>  <span class="keywordtype">void</span> <a class="code" href="classERF.html#ad64b5fe566102dc053b35ad337971a3e">advance_microphysics</a> (<span class="keywordtype">int</span> lev,</div>
<div class="line"><a name="l00379"></a><span class="lineno"> 379</span>  amrex::MultiFab& cons_in,</div>
<div class="line"><a name="l00380"></a><span class="lineno"> 380</span>  <span class="keyword">const</span> <a class="code" href="ERF__ShocInterface_8H.html#ab8a9d2a7cbf2084043f890c3d0a68f57">amrex::Real</a>& dt_advance,</div>
<div class="line"><a name="l00381"></a><span class="lineno"> 381</span>  <span class="keyword">const</span> <span class="keywordtype">int</span>& iteration,</div>
<div class="line"><a name="l00382"></a><span class="lineno"> 382</span>  <span class="keyword">const</span> <a class="code" href="ERF__ShocInterface_8H.html#ab8a9d2a7cbf2084043f890c3d0a68f57">amrex::Real</a>& time);</div>
<div class="line"><a name="l00383"></a><span class="lineno"> 383</span>  </div>
<div class="line"><a name="l00384"></a><span class="lineno"> 384</span>  <span class="keywordtype">void</span> <a class="code" href="classERF.html#ab463dd8a88f21f3a5ff33b583a883c28">advance_lsm</a> (<span class="keywordtype">int</span> lev,</div>
<div class="line"><a name="l00385"></a><span class="lineno"> 385</span>  amrex::MultiFab& cons_in,</div>
<div class="line"><a name="l00386"></a><span class="lineno"> 386</span>  amrex::MultiFab& xvel_in,</div>
<div class="line"><a name="l00387"></a><span class="lineno"> 387</span>  amrex::MultiFab& yvel_in,</div>
<div class="line"><a name="l00388"></a><span class="lineno"> 388</span>  <span class="keyword">const</span> <a class="code" href="ERF__ShocInterface_8H.html#ab8a9d2a7cbf2084043f890c3d0a68f57">amrex::Real</a>& dt_advance);</div>
<div class="line"><a name="l00389"></a><span class="lineno"> 389</span>  </div>
<div class="line"><a name="l00390"></a><span class="lineno"> 390</span>  <span class="keywordtype">void</span> <a class="code" href="classERF.html#ad3ef30449c979e90c40b0c6f79864e8f">advance_radiation</a> (<span class="keywordtype">int</span> lev,</div>
<div class="line"><a name="l00391"></a><span class="lineno"> 391</span>  amrex::MultiFab& cons_in,</div>
<div class="line"><a name="l00392"></a><span class="lineno"> 392</span>  <span class="keyword">const</span> <a class="code" href="ERF__ShocInterface_8H.html#ab8a9d2a7cbf2084043f890c3d0a68f57">amrex::Real</a>& dt_advance);</div>
<div class="line"><a name="l00393"></a><span class="lineno"> 393</span>  </div>
<div class="line"><a name="l00394"></a><span class="lineno"> 394</span> <span class="preprocessor">#ifdef ERF_USE_SHOC</span></div>
<div class="line"><a name="l00395"></a><span class="lineno"> 395</span>  <span class="keywordtype">void</span> compute_shoc_tendencies (<span class="keywordtype">int</span> lev,</div>
<div class="line"><a name="l00396"></a><span class="lineno"> 396</span>  amrex::MultiFab* <a class="code" href="namespaceVars.html#abe828d925ca6d1854b33e0aa386344afa47abe072e12c61d29cde15a509a0664b">cons</a>,</div>
<div class="line"><a name="l00397"></a><span class="lineno"> 397</span>  amrex::MultiFab* <a class="code" href="namespaceVars.html#abe828d925ca6d1854b33e0aa386344afa2a10a6e726515894b07621908abd4c0c">xvel</a>,</div>
<div class="line"><a name="l00398"></a><span class="lineno"> 398</span>  amrex::MultiFab* <a class="code" href="namespaceVars.html#abe828d925ca6d1854b33e0aa386344afa81793b83204cfa56d4683bc676fbbfb6">yvel</a>,</div>
<div class="line"><a name="l00399"></a><span class="lineno"> 399</span>  amrex::MultiFab* <a class="code" href="namespaceVars.html#abe828d925ca6d1854b33e0aa386344afa48ee63b17bc216e9661511c33c68bd8b">zvel</a>,</div>
<div class="line"><a name="l00400"></a><span class="lineno"> 400</span>  <a class="code" href="ERF__ShocInterface_8H.html#ab8a9d2a7cbf2084043f890c3d0a68f57">amrex::Real</a>* w_subsid,</div>
<div class="line"><a name="l00401"></a><span class="lineno"> 401</span>  amrex::MultiFab* <a class="code" href="ERF__DataStruct_8H.html#a09df0fe8e0778d7f1052a97aa214248baf5fa13cfd781cde0d363f337d7e76d7e">tau13</a>,</div>
<div class="line"><a name="l00402"></a><span class="lineno"> 402</span>  amrex::MultiFab* <a class="code" href="ERF__DataStruct_8H.html#a09df0fe8e0778d7f1052a97aa214248ba181b302bd0f99081c3c22fa38e1f8b73">tau23</a>,</div>
<div class="line"><a name="l00403"></a><span class="lineno"> 403</span>  amrex::MultiFab* hfx3,</div>
<div class="line"><a name="l00404"></a><span class="lineno"> 404</span>  amrex::MultiFab* qfx3,</div>
<div class="line"><a name="l00405"></a><span class="lineno"> 405</span>  amrex::MultiFab* eddyDiffs,</div>
<div class="line"><a name="l00406"></a><span class="lineno"> 406</span>  amrex::MultiFab* <a class="code" href="classERF.html#a93e63e5af35efa564fd4195e8703f84c">z_phys_nd</a>,</div>
<div class="line"><a name="l00407"></a><span class="lineno"> 407</span>  <span class="keyword">const</span> <a class="code" href="ERF__ShocInterface_8H.html#ab8a9d2a7cbf2084043f890c3d0a68f57">amrex::Real</a>& dt_advance);</div>
<div class="line"><a name="l00408"></a><span class="lineno"> 408</span> <span class="preprocessor">#endif</span></div>
<div class="line"><a name="l00409"></a><span class="lineno"> 409</span>  </div>
<div class="line"><a name="l00410"></a><span class="lineno"> 410</span> <span class="preprocessor">#ifdef ERF_USE_P3</span></div>
<div class="line"><a name="l00411"></a><span class="lineno"> 411</span>  <span class="keywordtype">void</span> compute_p3_tendencies (<span class="keywordtype">int</span> lev,</div>
<div class="line"><a name="l00412"></a><span class="lineno"> 412</span>  amrex::MultiFab& cons_in,</div>
<div class="line"><a name="l00413"></a><span class="lineno"> 413</span>  amrex::MultiFab& source,</div>
<div class="line"><a name="l00414"></a><span class="lineno"> 414</span>  <span class="keyword">const</span> <a class="code" href="ERF__ShocInterface_8H.html#ab8a9d2a7cbf2084043f890c3d0a68f57">amrex::Real</a>& dt_advance);</div>
<div class="line"><a name="l00415"></a><span class="lineno"> 415</span> <span class="preprocessor">#endif</span></div>
<div class="line"><a name="l00416"></a><span class="lineno"> 416</span>  </div>
<div class="line"><a name="l00417"></a><span class="lineno"> 417</span>  <span class="keywordtype">void</span> <a class="code" href="classERF.html#a544e918fa814be3996d52654b05e5a30">build_fine_mask</a> (<span class="keywordtype">int</span> lev, amrex::MultiFab& <a class="code" href="classERF.html#a89fb9dab8bc5e5cb0910517aecad7683">fine_mask</a>);</div>
<div class="line"><a name="l00418"></a><span class="lineno"> 418</span>  </div>
<div class="line"><a name="l00419"></a><span class="lineno"> 419</span>  <span class="keywordtype">void</span> <a class="code" href="classERF.html#a01987b2556834788694f2f3741a2afe4">MakeHorizontalAverages</a> ();</div>
<div class="line"><a name="l00420"></a><span class="lineno"> 420</span>  <span class="keywordtype">void</span> <a class="code" href="classERF.html#a93ed2dd2c2441da6853d6f48b6467324">MakeDiagnosticAverage</a> (amrex::Vector<amrex::Real>& h_havg, amrex::MultiFab& S, <span class="keywordtype">int</span> n);</div>
<div class="line"><a name="l00421"></a><span class="lineno"><a class="line" href="classERF.html#af1981699bedbbfd6785f26ca340a74d8"> 421</a></span>  <span class="keywordtype">void</span> <a class="code" href="classERF.html#af1981699bedbbfd6785f26ca340a74d8">derive_upwp</a> (amrex::Vector<amrex::Real>& h_havg);</div>
<div class="line"><a name="l00422"></a><span class="lineno"> 422</span>  </div>
<div class="line"><a name="l00423"></a><span class="lineno"> 423</span>  <span class="comment">// Write plotfile to disk</span></div>
<div class="line"><a name="l00424"></a><span class="lineno"> 424</span>  <span class="keywordtype">void</span> <a class="code" href="classERF.html#ad3e288d14d937e5b07433342d5bda919">Write3DPlotFile</a> (<span class="keywordtype">int</span> which, PlotFileType plotfile_type, amrex::Vector<std::string> plot_var_names);</div>
<div class="line"><a name="l00425"></a><span class="lineno"> 425</span>  <span class="keywordtype">void</span> <a class="code" href="classERF.html#a8494cd7a4f6dad7b19f239783f32465f">Write2DPlotFile</a> (<span class="keywordtype">int</span> which, PlotFileType plotfile_type, amrex::Vector<std::string> plot_var_names);</div>
<div class="line"><a name="l00426"></a><span class="lineno"> 426</span>  </div>
<div class="line"><a name="l00427"></a><span class="lineno"> 427</span>  <span class="comment">// Write subvolume of data into a different "plotfile"</span></div>
<div class="line"><a name="l00428"></a><span class="lineno"> 428</span>  <span class="keywordtype">void</span> <a class="code" href="classERF.html#aac1a2bfd125f077eeaf42f3cbb5c860f">WriteSubvolume</a> (<span class="keywordtype">int</span> <a class="code" href="namespacemodule__mp__morr__two__moment.html#a671a32c11c18f9067873e08fd694f848">isub</a>, amrex::Vector<std::string> subvol_var_names);</div>
<div class="line"><a name="l00429"></a><span class="lineno"> 429</span>  </div>
<div class="line"><a name="l00430"></a><span class="lineno"> 430</span>  <span class="keywordtype">void</span> <a class="code" href="classERF.html#a61510e69bdaee84a01cf33943b043a5c">WriteMultiLevelPlotfileWithTerrain</a> (<span class="keyword">const</span> std::string &plotfilename,</div>
<div class="line"><a name="l00431"></a><span class="lineno"> 431</span>  <span class="keywordtype">int</span> nlevels,</div>
<div class="line"><a name="l00432"></a><span class="lineno"> 432</span>  <span class="keyword">const</span> amrex::Vector<const amrex::MultiFab*> &mf,</div>
<div class="line"><a name="l00433"></a><span class="lineno"> 433</span>  <span class="keyword">const</span> amrex::Vector<const amrex::MultiFab*> &mf_nd,</div>
<div class="line"><a name="l00434"></a><span class="lineno"> 434</span>  <span class="keyword">const</span> amrex::Vector<std::string> &varnames,</div>
<div class="line"><a name="l00435"></a><span class="lineno"> 435</span>  <span class="keyword">const</span> amrex::Vector<amrex::Geometry>& my_geom,</div>
<div class="line"><a name="l00436"></a><span class="lineno"> 436</span>  <a class="code" href="ERF__ShocInterface_8H.html#ab8a9d2a7cbf2084043f890c3d0a68f57">amrex::Real</a> time,</div>
<div class="line"><a name="l00437"></a><span class="lineno"> 437</span>  <span class="keyword">const</span> amrex::Vector<int> &level_steps,</div>
<div class="line"><a name="l00438"></a><span class="lineno"> 438</span>  <span class="keyword">const</span> amrex::Vector<amrex::IntVect>& my_ref_ratio,</div>
<div class="line"><a name="l00439"></a><span class="lineno"> 439</span>  <span class="keyword">const</span> std::string &versionName = <span class="stringliteral">"HyperCLaw-V1.1"</span>,</div>
<div class="line"><a name="l00440"></a><span class="lineno"> 440</span>  <span class="keyword">const</span> std::string &levelPrefix = <span class="stringliteral">"Level_"</span>,</div>
<div class="line"><a name="l00441"></a><span class="lineno"> 441</span>  <span class="keyword">const</span> std::string &mfPrefix = <span class="stringliteral">"Cell"</span>,</div>
<div class="line"><a name="l00442"></a><span class="lineno"> 442</span>  <span class="keyword">const</span> amrex::Vector<std::string>& extra_dirs = amrex::Vector<std::string>()) <span class="keyword">const</span>;</div>
<div class="line"><a name="l00443"></a><span class="lineno"> 443</span>  </div>
<div class="line"><a name="l00444"></a><span class="lineno"> 444</span>  </div>
<div class="line"><a name="l00445"></a><span class="lineno"> 445</span>  <span class="keywordtype">void</span> <a class="code" href="classERF.html#a3a918bd26ed0c1dc2efa75c2586ff664">WriteGenericPlotfileHeaderWithTerrain</a> (std::ostream &HeaderFile,</div>
<div class="line"><a name="l00446"></a><span class="lineno"> 446</span>  <span class="keywordtype">int</span> nlevels,</div>
<div class="line"><a name="l00447"></a><span class="lineno"> 447</span>  <span class="keyword">const</span> amrex::Vector<amrex::BoxArray> &bArray,</div>
<div class="line"><a name="l00448"></a><span class="lineno"> 448</span>  <span class="keyword">const</span> amrex::Vector<std::string> &varnames,</div>
<div class="line"><a name="l00449"></a><span class="lineno"> 449</span>  <span class="keyword">const</span> amrex::Vector<amrex::Geometry>& my_geom,</div>
<div class="line"><a name="l00450"></a><span class="lineno"> 450</span>  <a class="code" href="ERF__ShocInterface_8H.html#ab8a9d2a7cbf2084043f890c3d0a68f57">amrex::Real</a> time,</div>
<div class="line"><a name="l00451"></a><span class="lineno"> 451</span>  <span class="keyword">const</span> amrex::Vector<int> &level_steps,</div>
<div class="line"><a name="l00452"></a><span class="lineno"> 452</span>  <span class="keyword">const</span> amrex::Vector<amrex::IntVect>& my_ref_ratio,</div>
<div class="line"><a name="l00453"></a><span class="lineno"> 453</span>  <span class="keyword">const</span> std::string &versionName,</div>
<div class="line"><a name="l00454"></a><span class="lineno"> 454</span>  <span class="keyword">const</span> std::string &levelPrefix,</div>
<div class="line"><a name="l00455"></a><span class="lineno"> 455</span>  <span class="keyword">const</span> std::string &mfPrefix) <span class="keyword">const</span>;</div>
<div class="line"><a name="l00456"></a><span class="lineno"> 456</span>  </div>
<div class="line"><a name="l00457"></a><span class="lineno"> 457</span>  <span class="keywordtype">void</span> <a class="code" href="classERF.html#a29929644893f3e44beb5ed9403cbdaac">erf_enforce_hse</a> (<span class="keywordtype">int</span> lev,</div>
<div class="line"><a name="l00458"></a><span class="lineno"> 458</span>  amrex::MultiFab& dens, amrex::MultiFab& <a class="code" href="namespaceMicVar__Kess.html#a033cdb9ee01e3e254168b389c3ce9b20a82dd7c202e6cce14520ac01cfaa4f4ad">pres</a>, amrex::MultiFab& <a class="code" href="namespacemodule__mp__morr__two__moment.html#a0bb82f163dcece1b2d052202bf56bee3">pi</a>,</div>
<div class="line"><a name="l00459"></a><span class="lineno"> 459</span>  amrex::MultiFab& th, amrex::MultiFab& <a class="code" href="namespaceMicVar__Kess.html#a033cdb9ee01e3e254168b389c3ce9b20af099273d19f4b8cdca199c5177231e35">qv</a>,</div>
<div class="line"><a name="l00460"></a><span class="lineno"> 460</span>  std::unique_ptr<amrex::MultiFab>& z_cc);</div>
<div class="line"><a name="l00461"></a><span class="lineno"> 461</span>  </div>
<div class="line"><a name="l00462"></a><span class="lineno"> 462</span> <span class="preprocessor">#ifdef ERF_USE_NETCDF</span><span class="comment"></span></div>
<div class="line"><a name="l00463"></a><span class="lineno"> 463</span> <span class="comment"> //! Write a timestep to 1D vertical column output for coupling</span></div>
<div class="line"><a name="l00464"></a><span class="lineno"> 464</span> <span class="comment"></span> <span class="keywordtype">void</span> writeToNCColumnFile (<span class="keywordtype">int</span> lev,</div>
<div class="line"><a name="l00465"></a><span class="lineno"> 465</span>  <span class="keyword">const</span> std::string& colfile_name, <a class="code" href="ERF__ShocInterface_8H.html#ab8a9d2a7cbf2084043f890c3d0a68f57">amrex::Real</a> xloc, <a class="code" href="ERF__ShocInterface_8H.html#ab8a9d2a7cbf2084043f890c3d0a68f57">amrex::Real</a> yloc,</div>
<div class="line"><a name="l00466"></a><span class="lineno"> 466</span>  <a class="code" href="ERF__ShocInterface_8H.html#ab8a9d2a7cbf2084043f890c3d0a68f57">amrex::Real</a> time);</div>
<div class="line"><a name="l00467"></a><span class="lineno"> 467</span> <span class="preprocessor">#endif </span><span class="comment">//ERF_USE_NETCDF</span></div>
<div class="line"><a name="l00468"></a><span class="lineno"> 468</span>  </div>
<div class="line"><a name="l00469"></a><span class="lineno"> 469</span>  <span class="keywordtype">void</span> <a class="code" href="classERF.html#a2908bcd920ab5e3fef171a37302853ec">init_from_input_sounding</a> (<span class="keywordtype">int</span> lev);</div>
<div class="line"><a name="l00470"></a><span class="lineno"> 470</span>  </div>
<div class="line"><a name="l00471"></a><span class="lineno"> 471</span>  <span class="keywordtype">void</span> <a class="code" href="classERF.html#ad05e23fd33316aa1a5cb081fbe714bc1">init_immersed_forcing</a> (<span class="keywordtype">int</span> lev);</div>
<div class="line"><a name="l00472"></a><span class="lineno"> 472</span>  </div>
<div class="line"><a name="l00473"></a><span class="lineno"> 473</span>  <span class="keywordtype">void</span> <a class="code" href="classERF.html#abfdc95a7c3cf7e413c1352bac38c93e8">input_sponge</a> (<span class="keywordtype">int</span> lev);</div>
<div class="line"><a name="l00474"></a><span class="lineno"> 474</span>  </div>
<div class="line"><a name="l00475"></a><span class="lineno"> 475</span>  <span class="keywordtype">void</span> <a class="code" href="classERF.html#a857a8f76768ec4451b995cbf4f4ac176">init_from_hse</a> (<span class="keywordtype">int</span> lev);</div>
<div class="line"><a name="l00476"></a><span class="lineno"> 476</span>  </div>
<div class="line"><a name="l00477"></a><span class="lineno"> 477</span>  <span class="keywordtype">void</span> <a class="code" href="classERF.html#af4f87fb01d61c18d8eb85ac5ac159785">init_thin_body</a> (<span class="keywordtype">int</span> lev, <span class="keyword">const</span> amrex::BoxArray& ba, <span class="keyword">const</span> amrex::DistributionMapping& dm);</div>
<div class="line"><a name="l00478"></a><span class="lineno"> 478</span>  </div>
<div class="line"><a name="l00479"></a><span class="lineno"> 479</span>  <span class="keywordtype">void</span> <a class="code" href="classERF.html#a489b764a2e6fdbb983c1beea2cc80e00">FillForecastStateMultiFabs</a>(<span class="keyword">const</span> <span class="keywordtype">int</span> lev,</div>
<div class="line"><a name="l00480"></a><span class="lineno"> 480</span>  <span class="keyword">const</span> std::string& filename,</div>
<div class="line"><a name="l00481"></a><span class="lineno"> 481</span>  <span class="keyword">const</span> std::unique_ptr<amrex::MultiFab>& <a class="code" href="classERF.html#a93e63e5af35efa564fd4195e8703f84c">z_phys_nd</a>,</div>
<div class="line"><a name="l00482"></a><span class="lineno"> 482</span>  amrex::Vector<amrex::Vector<amrex::MultiFab>>& forecast_state);</div>
<div class="line"><a name="l00483"></a><span class="lineno"> 483</span>  </div>
<div class="line"><a name="l00484"></a><span class="lineno"> 484</span>  <span class="keywordtype">void</span> <a class="code" href="classERF.html#add8dd48cc5fab80e2b807fc9674b9027">FillSurfaceStateMultiFabs</a>(<span class="keyword">const</span> <span class="keywordtype">int</span> lev,</div>
<div class="line"><a name="l00485"></a><span class="lineno"> 485</span>  <span class="keyword">const</span> std::string& filename,</div>
<div class="line"><a name="l00486"></a><span class="lineno"> 486</span>  amrex::Vector<amrex::MultiFab>& surface_state);</div>
<div class="line"><a name="l00487"></a><span class="lineno"> 487</span>  </div>
<div class="line"><a name="l00488"></a><span class="lineno"> 488</span>  </div>
<div class="line"><a name="l00489"></a><span class="lineno"> 489</span>  <span class="keywordtype">void</span> <a class="code" href="classERF.html#aab869f87585cadfbf1c77f0dff4d6350">WeatherDataInterpolation</a>(<span class="keyword">const</span> <span class="keywordtype">int</span> nlevs,</div>
<div class="line"><a name="l00490"></a><span class="lineno"> 490</span>  <span class="keyword">const</span> <a class="code" href="ERF__ShocInterface_8H.html#ab8a9d2a7cbf2084043f890c3d0a68f57">amrex::Real</a> time,</div>
<div class="line"><a name="l00491"></a><span class="lineno"> 491</span>  amrex::Vector<std::unique_ptr<amrex::MultiFab>>& <a class="code" href="classERF.html#a93e63e5af35efa564fd4195e8703f84c">z_phys_nd</a>,</div>
<div class="line"><a name="l00492"></a><span class="lineno"> 492</span>  <span class="keywordtype">bool</span> regrid_forces_file_read);</div>
<div class="line"><a name="l00493"></a><span class="lineno"> 493</span>  </div>
<div class="line"><a name="l00494"></a><span class="lineno"> 494</span>  <span class="keywordtype">void</span> <a class="code" href="classERF.html#a01774abc675906eeb3d6fc5345626678">SurfaceDataInterpolation</a>(<span class="keyword">const</span> <span class="keywordtype">int</span> nlevs,</div>
<div class="line"><a name="l00495"></a><span class="lineno"> 495</span>  <span class="keyword">const</span> <a class="code" href="ERF__ShocInterface_8H.html#ab8a9d2a7cbf2084043f890c3d0a68f57">amrex::Real</a> time,</div>
<div class="line"><a name="l00496"></a><span class="lineno"> 496</span>  amrex::Vector<std::unique_ptr<amrex::MultiFab>>& <a class="code" href="classERF.html#a93e63e5af35efa564fd4195e8703f84c">z_phys_nd</a>,</div>
<div class="line"><a name="l00497"></a><span class="lineno"> 497</span>  <span class="keywordtype">bool</span> regrid_forces_file_read);</div>
<div class="line"><a name="l00498"></a><span class="lineno"> 498</span>  </div>
<div class="line"><a name="l00499"></a><span class="lineno"> 499</span>  <span class="keywordtype">void</span> <a class="code" href="classERF.html#ad3327c0ac80f4eb18415b25b307f847b">create_random_perturbations</a> (<span class="keyword">const</span> <span class="keywordtype">int</span> lev,</div>
<div class="line"><a name="l00500"></a><span class="lineno"> 500</span>  amrex::MultiFab& cons_pert,</div>
<div class="line"><a name="l00501"></a><span class="lineno"> 501</span>  amrex::MultiFab& xvel_pert,</div>
<div class="line"><a name="l00502"></a><span class="lineno"> 502</span>  amrex::MultiFab& yvel_pert,</div>
<div class="line"><a name="l00503"></a><span class="lineno"> 503</span>  amrex::MultiFab& zvel_pert);</div>
<div class="line"><a name="l00504"></a><span class="lineno"> 504</span>  </div>
<div class="line"><a name="l00505"></a><span class="lineno"> 505</span>  <span class="keywordtype">void</span> <a class="code" href="classERF.html#aa9e032c8e20ffe105077d10c926cf2d9">apply_gaussian_smoothing_to_perturbations</a> (<span class="keyword">const</span> <span class="keywordtype">int</span> lev,</div>
<div class="line"><a name="l00506"></a><span class="lineno"> 506</span>  amrex::MultiFab& cons_pert,</div>
<div class="line"><a name="l00507"></a><span class="lineno"> 507</span>  amrex::MultiFab& xvel_pert,</div>
<div class="line"><a name="l00508"></a><span class="lineno"> 508</span>  amrex::MultiFab& yvel_pert,</div>
<div class="line"><a name="l00509"></a><span class="lineno"> 509</span>  amrex::MultiFab& zvel_pert);</div>
<div class="line"><a name="l00510"></a><span class="lineno"> 510</span>  </div>
<div class="line"><a name="l00511"></a><span class="lineno"> 511</span>  <span class="keywordtype">void</span> <a class="code" href="classERF.html#a604939a8058f7efa36a427adb889739c">init_custom</a> (<span class="keywordtype">int</span> lev);</div>
<div class="line"><a name="l00512"></a><span class="lineno"> 512</span>  </div>
<div class="line"><a name="l00513"></a><span class="lineno"> 513</span> <span class="preprocessor">#ifdef ERF_USE_MULTIBLOCK</span></div>
<div class="line"><a name="l00514"></a><span class="lineno"> 514</span>  <span class="comment">// constructor used when ERF is created by a multiblock driver</span></div>
<div class="line"><a name="l00515"></a><span class="lineno"> 515</span>  <span class="comment">// calls AmrCore constructor -> AmrMesh constructor</span></div>
<div class="line"><a name="l00516"></a><span class="lineno"> 516</span>  <a class="code" href="classERF.html#a30129012dd367825e5e4fd1406694f58">ERF</a> (<span class="keyword">const</span> amrex::RealBox& rb, <span class="keywordtype">int</span> max_level_in,</div>
<div class="line"><a name="l00517"></a><span class="lineno"> 517</span>  <span class="keyword">const</span> amrex::Vector<int>& n_cell_in, <span class="keywordtype">int</span> coord,</div>
<div class="line"><a name="l00518"></a><span class="lineno"> 518</span>  <span class="keyword">const</span> amrex::Vector<amrex::IntVect>& ref_ratio,</div>
<div class="line"><a name="l00519"></a><span class="lineno"> 519</span>  <span class="keyword">const</span> amrex::Array<int,AMREX_SPACEDIM>& is_per,</div>
<div class="line"><a name="l00520"></a><span class="lineno"> 520</span>  std::string prefix);</div>
<div class="line"><a name="l00521"></a><span class="lineno"> 521</span>  </div>
<div class="line"><a name="l00522"></a><span class="lineno"> 522</span>  <span class="comment">// Advance a block specified number of time steps</span></div>
<div class="line"><a name="l00523"></a><span class="lineno"> 523</span>  <span class="keywordtype">void</span> Evolve_MB (<span class="keywordtype">int</span> MBstep, <span class="keywordtype">int</span> max_block_step);</div>
<div class="line"><a name="l00524"></a><span class="lineno"> 524</span>  </div>
<div class="line"><a name="l00525"></a><span class="lineno"> 525</span>  <span class="comment">// get the current time values and dt</span></div>
<div class="line"><a name="l00526"></a><span class="lineno"> 526</span>  <a class="code" href="ERF__ShocInterface_8H.html#ab8a9d2a7cbf2084043f890c3d0a68f57">amrex::Real</a> get_t_old (<span class="keywordtype">int</span> lev) { <span class="keywordflow">return</span> <a class="code" href="classERF.html#a7085d7d5fc94a0f84efc06957267d58e">t_old</a>[lev]; }</div>
<div class="line"><a name="l00527"></a><span class="lineno"> 527</span>  <a class="code" href="ERF__ShocInterface_8H.html#ab8a9d2a7cbf2084043f890c3d0a68f57">amrex::Real</a> get_t_new (<span class="keywordtype">int</span> lev) { <span class="keywordflow">return</span> <a class="code" href="classERF.html#a65741b6379d273c19a25cf48bb947614">t_new</a>[lev]; }</div>
<div class="line"><a name="l00528"></a><span class="lineno"> 528</span>  <a class="code" href="ERF__ShocInterface_8H.html#ab8a9d2a7cbf2084043f890c3d0a68f57">amrex::Real</a> get_dt (<span class="keywordtype">int</span> lev) { <span class="keywordflow">return</span> <a class="code" href="classERF.html#ad34bae243fdb6c3029f5abe4fb4bca2d">dt</a>[lev]; }</div>
<div class="line"><a name="l00529"></a><span class="lineno"> 529</span>  </div>
<div class="line"><a name="l00530"></a><span class="lineno"> 530</span>  <span class="comment">// Set parmparse prefix for MultiBlock</span></div>
<div class="line"><a name="l00531"></a><span class="lineno"> 531</span>  <span class="keywordtype">void</span> SetParmParsePrefix (std::string name) { <a class="code" href="classERF.html#a59df30e7a5537c8543bb00772bd98b58">pp_prefix</a> = name; }</div>
<div class="line"><a name="l00532"></a><span class="lineno"> 532</span>  </div>
<div class="line"><a name="l00533"></a><span class="lineno"> 533</span>  <span class="comment">// Set 'this' from multiblock container</span></div>
<div class="line"><a name="l00534"></a><span class="lineno"> 534</span>  <span class="keywordtype">void</span> SetMultiBlockPointer (MultiBlockContainer *mbc) { m_mbc = mbc; }</div>
<div class="line"><a name="l00535"></a><span class="lineno"> 535</span>  </div>
<div class="line"><a name="l00536"></a><span class="lineno"> 536</span>  <span class="comment">// Public data copy for MB</span></div>
<div class="line"><a name="l00537"></a><span class="lineno"> 537</span>  std::vector<amrex::Box> domain_p;</div>
<div class="line"><a name="l00538"></a><span class="lineno"> 538</span>  </div>
<div class="line"><a name="l00539"></a><span class="lineno"> 539</span>  <span class="comment">// Primary solution data data containers</span></div>
<div class="line"><a name="l00540"></a><span class="lineno"> 540</span>  amrex::Vector<amrex::Vector<amrex::MultiFab> > <a class="code" href="classERF.html#a1204ca4dc5d79f5da191ffbe09dfab9b">vars_new</a>;</div>
<div class="line"><a name="l00541"></a><span class="lineno"> 541</span>  amrex::Vector<amrex::Vector<amrex::MultiFab> > <a class="code" href="classERF.html#af31e928baa970a1507dfb0233b352542">vars_old</a>;</div>
<div class="line"><a name="l00542"></a><span class="lineno"> 542</span>  </div>
<div class="line"><a name="l00543"></a><span class="lineno"> 543</span>  <span class="comment">// Velocity time averaged field</span></div>
<div class="line"><a name="l00544"></a><span class="lineno"> 544</span>  amrex::Vector<std::unique_ptr<amrex::MultiFab>> <a class="code" href="classERF.html#a3e146164ca6929ec6d4984b6a3f43c81">vel_t_avg</a>;</div>
<div class="line"><a name="l00545"></a><span class="lineno"> 545</span>  amrex::Vector<amrex::Real> <a class="code" href="classERF.html#a6837423e9248e923fcaa1987b59d8160">t_avg_cnt</a>;</div>
<div class="line"><a name="l00546"></a><span class="lineno"> 546</span> <span class="preprocessor">#endif</span></div>
<div class="line"><a name="l00547"></a><span class="lineno"> 547</span>  </div>
<div class="line"><a name="l00548"></a><span class="lineno"><a class="line" href="classERF.html#a59df30e7a5537c8543bb00772bd98b58"> 548</a></span>  std::string <a class="code" href="classERF.html#a59df30e7a5537c8543bb00772bd98b58">pp_prefix</a> {<span class="stringliteral">"erf"</span>};</div>
<div class="line"><a name="l00549"></a><span class="lineno"> 549</span>  </div>
<div class="line"><a name="l00550"></a><span class="lineno"> 550</span>  <span class="keywordtype">void</span> <a class="code" href="classERF.html#a2135641de33dea5057799569c74cac42">fill_from_bndryregs</a> (<span class="keyword">const</span> amrex::Vector<amrex::MultiFab*>& mfs,</div>
<div class="line"><a name="l00551"></a><span class="lineno"> 551</span>  <a class="code" href="ERF__ShocInterface_8H.html#ab8a9d2a7cbf2084043f890c3d0a68f57">amrex::Real</a> time);</div>
<div class="line"><a name="l00552"></a><span class="lineno"> 552</span>  </div>
<div class="line"><a name="l00553"></a><span class="lineno"> 553</span> <span class="preprocessor">#ifdef ERF_USE_NETCDF</span></div>
<div class="line"><a name="l00554"></a><span class="lineno"> 554</span>  <span class="keywordtype">void</span> init_from_wrfinput (<span class="keywordtype">int</span> lev,</div>
<div class="line"><a name="l00555"></a><span class="lineno"> 555</span>  amrex::MultiFab& <a class="code" href="classERF.html#aedcdd9acc90656aa06cfe996899bc89b">mf_C1H</a>,</div>
<div class="line"><a name="l00556"></a><span class="lineno"> 556</span>  amrex::MultiFab& <a class="code" href="classERF.html#a5c98f5e6587a943a6924df301309d1d2">mf_C2H</a>,</div>
<div class="line"><a name="l00557"></a><span class="lineno"> 557</span>  amrex::MultiFab& <a class="code" href="classERF.html#a59c304e0eea1e0a38be9a4588b16eebc">mf_MUB</a>,</div>
<div class="line"><a name="l00558"></a><span class="lineno"> 558</span>  amrex::MultiFab& <a class="code" href="classERF.html#a2f83363a93a11de32b1239e42b472742">mf_PSFC</a>);</div>
<div class="line"><a name="l00559"></a><span class="lineno"> 559</span>  <span class="keywordtype">void</span> init_from_metgrid (<span class="keywordtype">int</span> lev);</div>
<div class="line"><a name="l00560"></a><span class="lineno"> 560</span>  <span class="keywordtype">void</span> init_from_ncfile (<span class="keywordtype">int</span> lev);</div>
<div class="line"><a name="l00561"></a><span class="lineno"> 561</span> <span class="preprocessor">#endif </span><span class="comment">// ERF_USE_NETCDF</span></div>
<div class="line"><a name="l00562"></a><span class="lineno"> 562</span>  </div>
<div class="line"><a name="l00563"></a><span class="lineno"> 563</span> <span class="preprocessor">#ifdef ERF_USE_WINDFARM</span></div>
<div class="line"><a name="l00564"></a><span class="lineno"> 564</span>  <span class="keywordtype">void</span> init_windfarm(<span class="keywordtype">int</span> lev);</div>
<div class="line"><a name="l00565"></a><span class="lineno"> 565</span>  <span class="keywordtype">void</span> advance_windfarm (<span class="keyword">const</span> amrex::Geometry& a_geom,</div>
<div class="line"><a name="l00566"></a><span class="lineno"> 566</span>  <span class="keyword">const</span> <a class="code" href="ERF__ShocInterface_8H.html#ab8a9d2a7cbf2084043f890c3d0a68f57">amrex::Real</a>& dt_advance,</div>
<div class="line"><a name="l00567"></a><span class="lineno"> 567</span>  amrex::MultiFab& cons_in,</div>
<div class="line"><a name="l00568"></a><span class="lineno"> 568</span>  amrex::MultiFab& U_old,</div>
<div class="line"><a name="l00569"></a><span class="lineno"> 569</span>  amrex::MultiFab& V_old,</div>
<div class="line"><a name="l00570"></a><span class="lineno"> 570</span>  amrex::MultiFab& W_old,</div>
<div class="line"><a name="l00571"></a><span class="lineno"> 571</span>  amrex::MultiFab& mf_vars_windfarm,</div>
<div class="line"><a name="l00572"></a><span class="lineno"> 572</span>  <span class="keyword">const</span> amrex::MultiFab& mf_Nturb,</div>
<div class="line"><a name="l00573"></a><span class="lineno"> 573</span>  <span class="keyword">const</span> amrex::MultiFab& mf_SMark,</div>
<div class="line"><a name="l00574"></a><span class="lineno"> 574</span>  <span class="keyword">const</span> <a class="code" href="ERF__ShocInterface_8H.html#ab8a9d2a7cbf2084043f890c3d0a68f57">amrex::Real</a>& time);</div>
<div class="line"><a name="l00575"></a><span class="lineno"> 575</span> <span class="preprocessor">#endif</span></div>
<div class="line"><a name="l00576"></a><span class="lineno"> 576</span>  </div>
<div class="line"><a name="l00577"></a><span class="lineno"><a class="line" href="classERF.html#a0572de619e757aab7ad9a4e0c7967da4"> 577</a></span>  <span class="keywordtype">void</span> <a class="code" href="classERF.html#a0572de619e757aab7ad9a4e0c7967da4">MakeEBGeometry</a> ();</div>
<div class="line"><a name="l00578"></a><span class="lineno"><a class="line" href="classERF.html#a0cf9cd65604501647629fd69a0d28bb6"> 578</a></span>  <span class="keywordtype">void</span> <a class="code" href="classERF.html#a0cf9cd65604501647629fd69a0d28bb6">make_eb_box</a> ();</div>
<div class="line"><a name="l00579"></a><span class="lineno"><a class="line" href="classERF.html#aeca994ecf1b09d58cdc991920504ec34"> 579</a></span>  <span class="keywordtype">void</span> <a class="code" href="classERF.html#aeca994ecf1b09d58cdc991920504ec34">make_eb_regular</a> ();</div>
<div class="line"><a name="l00580"></a><span class="lineno"> 580</span>  </div>
<div class="line"><a name="l00581"></a><span class="lineno"> 581</span>  <span class="comment">// more flexible version of AverageDown() that lets you average down across multiple levels</span></div>
<div class="line"><a name="l00582"></a><span class="lineno"> 582</span>  <span class="keywordtype">void</span> <a class="code" href="classERF.html#ae17524f168760cf435685a08d97480e7">AverageDownTo</a> (<span class="keywordtype">int</span> crse_lev, <span class="keywordtype">int</span> scomp, <span class="keywordtype">int</span> ncomp); <span class="comment">// NOLINT</span></div>
<div class="line"><a name="l00583"></a><span class="lineno"> 583</span>  </div>
<div class="line"><a name="l00584"></a><span class="lineno"> 584</span>  <span class="comment">// Write checkpoint file to disk</span></div>
<div class="line"><a name="l00585"></a><span class="lineno"> 585</span>  <span class="keywordtype">void</span> <a class="code" href="classERF.html#ad101fd46096db2d6b21544bfede6551f">WriteCheckpointFile</a> () <span class="keyword">const</span>;</div>
<div class="line"><a name="l00586"></a><span class="lineno"> 586</span>  </div>
<div class="line"><a name="l00587"></a><span class="lineno"> 587</span>  <span class="comment">// Read checkpoint file from disk</span></div>
<div class="line"><a name="l00588"></a><span class="lineno"> 588</span>  <span class="keywordtype">void</span> <a class="code" href="classERF.html#af285247b24b173cd851fe49799d17f42">ReadCheckpointFile</a> ();</div>
<div class="line"><a name="l00589"></a><span class="lineno"> 589</span>  </div>
<div class="line"><a name="l00590"></a><span class="lineno"> 590</span>  <span class="comment">// Read only velocities from checkpoint file</span></div>
<div class="line"><a name="l00591"></a><span class="lineno"> 591</span>  <span class="keywordtype">void</span> <a class="code" href="classERF.html#a6aaad5df62df3a0d99fb279812e6633a">ReadVelsOnlyFromCheckpointFile</a> (<span class="keywordtype">int</span> lev_to_fill, std::string& chkfile);</div>
<div class="line"><a name="l00592"></a><span class="lineno"> 592</span>  </div>
<div class="line"><a name="l00593"></a><span class="lineno"> 593</span>  <span class="comment">// read checkpoint file from disk -- called after instantiating m_SurfaceLayer</span></div>
<div class="line"><a name="l00594"></a><span class="lineno"> 594</span>  <span class="keywordtype">void</span> <a class="code" href="classERF.html#afdd04d6a1c2103e654f0cb6eda62436d">ReadCheckpointFileSurfaceLayer</a> ();</div>
<div class="line"><a name="l00595"></a><span class="lineno"> 595</span>  </div>
<div class="line"><a name="l00596"></a><span class="lineno"> 596</span>  <span class="keywordtype">void</span> <a class="code" href="classERF.html#a90705b531d560f1d3e314b6c61288942">init_zphys</a> (<span class="keywordtype">int</span> lev, <a class="code" href="ERF__ShocInterface_8H.html#ab8a9d2a7cbf2084043f890c3d0a68f57">amrex::Real</a> elapsed_time);</div>
<div class="line"><a name="l00597"></a><span class="lineno"> 597</span>  <span class="keywordtype">void</span> <a class="code" href="classERF.html#a18610f7aac948db169cf8a4642573027">remake_zphys</a> (<span class="keywordtype">int</span> lev, std::unique_ptr<amrex::MultiFab>& temp_zphys_nd);</div>
<div class="line"><a name="l00598"></a><span class="lineno"> 598</span>  <span class="keywordtype">void</span> <a class="code" href="classERF.html#a7dba7f9e6bd3f6898fac9ac2efcec692">update_terrain_arrays</a> (<span class="keywordtype">int</span> lev);</div>
<div class="line"><a name="l00599"></a><span class="lineno"> 599</span>  </div>
<div class="line"><a name="l00600"></a><span class="lineno"> 600</span> <span class="keyword">private</span>:</div>
<div class="line"><a name="l00601"></a><span class="lineno"> 601</span> <span class="comment"></span> </div>
<div class="line"><a name="l00602"></a><span class="lineno"> 602</span> <span class="comment"> ///////////////////////////</span></div>
<div class="line"><a name="l00603"></a><span class="lineno"> 603</span> <span class="comment"></span> <span class="comment">// private member functions</span><span class="comment"></span></div>
<div class="line"><a name="l00604"></a><span class="lineno"> 604</span> <span class="comment"> ///////////////////////////</span></div>
<div class="line"><a name="l00605"></a><span class="lineno"> 605</span> <span class="comment"></span> </div>
<div class="line"><a name="l00606"></a><span class="lineno"> 606</span>  <span class="comment">// read in some parameters from inputs file</span></div>
<div class="line"><a name="l00607"></a><span class="lineno"> 607</span>  <span class="keywordtype">void</span> <a class="code" href="classERF.html#a2d39cd3bdc3d90609ad3b14e266d190a">ReadParameters</a> ();</div>
<div class="line"><a name="l00608"></a><span class="lineno"> 608</span>  <span class="keywordtype">void</span> <a class="code" href="classERF.html#ad71a033b3fd107465a8621eaf7c77b28">ParameterSanityChecks</a> ();</div>
<div class="line"><a name="l00609"></a><span class="lineno"> 609</span>  </div>
<div class="line"><a name="l00610"></a><span class="lineno"> 610</span>  <span class="comment">// set covered coarse cells/faces to be the average of overlying fine cells/faces</span></div>
<div class="line"><a name="l00611"></a><span class="lineno"> 611</span>  <span class="keywordtype">void</span> <a class="code" href="classERF.html#a8202de1f8f372e3e6fdc483447c6a55f">AverageDown</a> ();</div>
<div class="line"><a name="l00612"></a><span class="lineno"> 612</span>  </div>
<div class="line"><a name="l00613"></a><span class="lineno"> 613</span>  <span class="keywordtype">void</span> <a class="code" href="classERF.html#a419510fced05e9afc05c466beeeb66f7">update_diffusive_arrays</a> (<span class="keywordtype">int</span> lev, <span class="keyword">const</span> amrex::BoxArray& ba, <span class="keyword">const</span> amrex::DistributionMapping& dm);</div>
<div class="line"><a name="l00614"></a><span class="lineno"> 614</span>  </div>
<div class="line"><a name="l00615"></a><span class="lineno"> 615</span>  <span class="keywordtype">void</span> <a class="code" href="classERF.html#adc284f421c5fd9dd15c0e5cbe4ff5fc8">Construct_ERFFillPatchers</a> (<span class="keywordtype">int</span> lev);</div>
<div class="line"><a name="l00616"></a><span class="lineno"> 616</span>  </div>
<div class="line"><a name="l00617"></a><span class="lineno"> 617</span>  <span class="keywordtype">void</span> <a class="code" href="classERF.html#ac0951404aa6802aad7a3be6b7375dfa2">Define_ERFFillPatchers</a> (<span class="keywordtype">int</span> lev);</div>
<div class="line"><a name="l00618"></a><span class="lineno"> 618</span>  </div>
<div class="line"><a name="l00619"></a><span class="lineno"><a class="line" href="classERF.html#a7261c4eb7722af0dfe6cdfb8e2e9e4db"> 619</a></span>  <span class="keywordtype">void</span> <a class="code" href="classERF.html#a7261c4eb7722af0dfe6cdfb8e2e9e4db">init1DArrays</a> ();</div>
<div class="line"><a name="l00620"></a><span class="lineno"> 620</span>  </div>
<div class="line"><a name="l00621"></a><span class="lineno"> 621</span>  <span class="keywordtype">void</span> <a class="code" href="classERF.html#a618e8fdff3239cc79d4145d02b1ecaa2">init_bcs</a> ();</div>
<div class="line"><a name="l00622"></a><span class="lineno"> 622</span>  <span class="keywordtype">void</span> <a class="code" href="classERF.html#add4cf5157e86e87b276a18f6cf02bc79">init_phys_bcs</a> (<span class="keywordtype">bool</span>& rho_read, <span class="keywordtype">bool</span>& read_prim_theta);</div>
<div class="line"><a name="l00623"></a><span class="lineno"> 623</span>  </div>
<div class="line"><a name="l00624"></a><span class="lineno"> 624</span>  <span class="keywordtype">void</span> <a class="code" href="classERF.html#aaf237fbe118d80f149295c0579608579">init_stuff</a> (<span class="keywordtype">int</span> lev, <span class="keyword">const</span> amrex::BoxArray& ba, <span class="keyword">const</span> amrex::DistributionMapping& dm,</div>
<div class="line"><a name="l00625"></a><span class="lineno"> 625</span>  amrex::Vector<amrex::MultiFab>& lev_new, amrex::Vector<amrex::MultiFab>& lev_old,</div>
<div class="line"><a name="l00626"></a><span class="lineno"> 626</span>  amrex::MultiFab& tmp_base_state,</div>
<div class="line"><a name="l00627"></a><span class="lineno"> 627</span>  std::unique_ptr<amrex::MultiFab>& tmp_zphys_nd);</div>
<div class="line"><a name="l00628"></a><span class="lineno"> 628</span>  </div>
<div class="line"><a name="l00629"></a><span class="lineno"> 629</span>  <span class="comment">// Initialize the Turbulent perturbation</span></div>
<div class="line"><a name="l00630"></a><span class="lineno"> 630</span>  <span class="keywordtype">void</span> <a class="code" href="classERF.html#aa89efe0abf37918ce3f212fb0e26f1bc">turbPert_update</a> (<span class="keyword">const</span> <span class="keywordtype">int</span> lev, <span class="keyword">const</span> <a class="code" href="ERF__ShocInterface_8H.html#ab8a9d2a7cbf2084043f890c3d0a68f57">amrex::Real</a> <a class="code" href="classERF.html#ad34bae243fdb6c3029f5abe4fb4bca2d">dt</a>);</div>
<div class="line"><a name="l00631"></a><span class="lineno"> 631</span>  <span class="keywordtype">void</span> <a class="code" href="classERF.html#afb76c0633e2ba944c543e7a03a5e9424">turbPert_amplitude</a> (<span class="keyword">const</span> <span class="keywordtype">int</span> lev);</div>
<div class="line"><a name="l00632"></a><span class="lineno"> 632</span>  </div>
<div class="line"><a name="l00633"></a><span class="lineno"> 633</span>  <span class="comment">// Initialize the integrator object</span></div>
<div class="line"><a name="l00634"></a><span class="lineno"> 634</span>  <span class="keywordtype">void</span> <a class="code" href="classERF.html#a5600f8ce250d4811012719fdf5e85f00">initialize_integrator</a> (<span class="keywordtype">int</span> lev, amrex::MultiFab& cons_mf, amrex::MultiFab& vel_mf);</div>
<div class="line"><a name="l00635"></a><span class="lineno"> 635</span>  </div>
<div class="line"><a name="l00636"></a><span class="lineno"> 636</span>  <span class="comment">// Create the physbcs objects</span></div>
<div class="line"><a name="l00637"></a><span class="lineno"> 637</span>  <span class="keywordtype">void</span> <a class="code" href="classERF.html#ac81ec7f74a1be1c4a1e6e15e08385ed5">make_physbcs</a> (<span class="keywordtype">int</span> lev);</div>
<div class="line"><a name="l00638"></a><span class="lineno"> 638</span>  </div>
<div class="line"><a name="l00639"></a><span class="lineno"> 639</span>  <span class="comment">// Initialize the microphysics object</span></div>
<div class="line"><a name="l00640"></a><span class="lineno"> 640</span>  <span class="keywordtype">void</span> <a class="code" href="classERF.html#afc2898daad269536c1a15443abf3fa75">initializeMicrophysics</a> (<span class="keyword">const</span> <span class="keywordtype">int</span>&);</div>
<div class="line"><a name="l00641"></a><span class="lineno"> 641</span>  </div>
<div class="line"><a name="l00642"></a><span class="lineno"> 642</span> <span class="preprocessor">#ifdef ERF_USE_WINDFARM</span></div>
<div class="line"><a name="l00643"></a><span class="lineno"> 643</span>  <span class="comment">// Initialize the windfarm object</span></div>
<div class="line"><a name="l00644"></a><span class="lineno"> 644</span>  <span class="keywordtype">void</span> initializeWindFarm (<span class="keyword">const</span> <span class="keywordtype">int</span>&);</div>
<div class="line"><a name="l00645"></a><span class="lineno"> 645</span> <span class="preprocessor">#endif</span></div>
<div class="line"><a name="l00646"></a><span class="lineno"> 646</span>  </div>
<div class="line"><a name="l00647"></a><span class="lineno"> 647</span>  <span class="comment">// Compute a vector of new MultiFabs by copying from valid region and filling ghost cells</span></div>
<div class="line"><a name="l00648"></a><span class="lineno"> 648</span>  <span class="comment">//</span></div>
<div class="line"><a name="l00649"></a><span class="lineno"> 649</span>  <span class="comment">// NOTE: FillPatch takes in an empty MF, and returns cell-centered + velocities (not momenta)</span></div>
<div class="line"><a name="l00650"></a><span class="lineno"> 650</span>  <span class="comment">//</span></div>
<div class="line"><a name="l00651"></a><span class="lineno"> 651</span>  <span class="comment">// This one works only at level = 0 (base state does not change)</span></div>
<div class="line"><a name="l00652"></a><span class="lineno"> 652</span>  <span class="keywordtype">void</span> <a class="code" href="classERF.html#a2aa2fc95da9d488b8d6ab0d3ac365c90">FillPatchCrseLevel</a> (<span class="keywordtype">int</span> lev, <a class="code" href="ERF__ShocInterface_8H.html#ab8a9d2a7cbf2084043f890c3d0a68f57">amrex::Real</a> time,</div>
<div class="line"><a name="l00653"></a><span class="lineno"> 653</span>  <span class="keyword">const</span> amrex::Vector<amrex::MultiFab*>& mfs_vel,</div>
<div class="line"><a name="l00654"></a><span class="lineno"> 654</span>  <span class="keywordtype">bool</span> cons_only=<span class="keyword">false</span>);</div>
<div class="line"><a name="l00655"></a><span class="lineno"> 655</span>  </div>
<div class="line"><a name="l00656"></a><span class="lineno"> 656</span>  <span class="comment">// This one works only at level > 0 (base state does change)</span></div>
<div class="line"><a name="l00657"></a><span class="lineno"> 657</span>  <span class="keywordtype">void</span> <a class="code" href="classERF.html#a6837d68f8ec62b1fbcc0badbf45f8d66">FillPatchFineLevel</a> (<span class="keywordtype">int</span> lev, <a class="code" href="ERF__ShocInterface_8H.html#ab8a9d2a7cbf2084043f890c3d0a68f57">amrex::Real</a> time,</div>
<div class="line"><a name="l00658"></a><span class="lineno"> 658</span>  <span class="keyword">const</span> amrex::Vector<amrex::MultiFab*>& mfs_vel,</div>
<div class="line"><a name="l00659"></a><span class="lineno"> 659</span>  <span class="keyword">const</span> amrex::Vector<amrex::MultiFab*>& mfs_mom,</div>
<div class="line"><a name="l00660"></a><span class="lineno"> 660</span>  <span class="keyword">const</span> amrex::MultiFab& old_base_state,</div>
<div class="line"><a name="l00661"></a><span class="lineno"> 661</span>  <span class="keyword">const</span> amrex::MultiFab& new_base_state,</div>
<div class="line"><a name="l00662"></a><span class="lineno"> 662</span>  <span class="keywordtype">bool</span> fillset=<span class="keyword">true</span>, <span class="keywordtype">bool</span> cons_only=<span class="keyword">false</span>);</div>
<div class="line"><a name="l00663"></a><span class="lineno"> 663</span>  </div>
<div class="line"><a name="l00664"></a><span class="lineno"> 664</span>  <span class="comment">// Compute new multifabs by copying data from valid region and filling ghost cells.</span></div>
<div class="line"><a name="l00665"></a><span class="lineno"> 665</span>  <span class="comment">// Unlike FillPatch, FillIntermediatePatch will use the supplied multifabs instead of fine level data.</span></div>
<div class="line"><a name="l00666"></a><span class="lineno"> 666</span>  <span class="comment">// This is to support filling boundary cells at an intermediate time between old/new times</span></div>
<div class="line"><a name="l00667"></a><span class="lineno"> 667</span>  <span class="comment">// on the fine level when valid data at a specific time is already available (such as</span></div>
<div class="line"><a name="l00668"></a><span class="lineno"> 668</span>  <span class="comment">// at each RK stage when integrating between initial and final times at a given level).</span></div>
<div class="line"><a name="l00669"></a><span class="lineno"> 669</span>  <span class="comment">//</span></div>
<div class="line"><a name="l00670"></a><span class="lineno"> 670</span>  <span class="comment">// NOTE: FillIntermediatePatch takes in updated momenta, and returns both updated velocity and momenta</span></div>
<div class="line"><a name="l00671"></a><span class="lineno"> 671</span>  <span class="comment">//</span></div>
<div class="line"><a name="l00672"></a><span class="lineno"> 672</span>  <span class="keywordtype">void</span> <a class="code" href="classERF.html#a6f5c620a402f7b1be46e05c0cbe48743">FillIntermediatePatch</a> (<span class="keywordtype">int</span> lev, <a class="code" href="ERF__ShocInterface_8H.html#ab8a9d2a7cbf2084043f890c3d0a68f57">amrex::Real</a> time,</div>
<div class="line"><a name="l00673"></a><span class="lineno"> 673</span>  <span class="keyword">const</span> amrex::Vector<amrex::MultiFab*>& mfs_vel,</div>
<div class="line"><a name="l00674"></a><span class="lineno"> 674</span>  <span class="keyword">const</span> amrex::Vector<amrex::MultiFab*>& mfs_mom,</div>
<div class="line"><a name="l00675"></a><span class="lineno"> 675</span>  <span class="keywordtype">int</span> ng_cons, <span class="keywordtype">int</span> ng_vel, <span class="keywordtype">bool</span> cons_only, <span class="keywordtype">int</span> icomp_cons, <span class="keywordtype">int</span> ncomp_cons);</div>
<div class="line"><a name="l00676"></a><span class="lineno"> 676</span>  </div>
<div class="line"><a name="l00677"></a><span class="lineno"> 677</span>  <span class="comment">// Fill all multifabs (and all components) in a vector of multifabs corresponding to the</span></div>
<div class="line"><a name="l00678"></a><span class="lineno"> 678</span>  <span class="comment">// grid variables defined in vars_old and vars_new just as FillCoarsePatch.</span></div>
<div class="line"><a name="l00679"></a><span class="lineno"> 679</span>  <span class="keywordtype">void</span> <a class="code" href="classERF.html#ac4497025ab94461899960ee067c2c72a">FillCoarsePatch</a> (<span class="keywordtype">int</span> lev, <a class="code" href="ERF__ShocInterface_8H.html#ab8a9d2a7cbf2084043f890c3d0a68f57">amrex::Real</a> time);</div>
<div class="line"><a name="l00680"></a><span class="lineno"> 680</span>  </div>
<div class="line"><a name="l00681"></a><span class="lineno"> 681</span>  <span class="comment">// advance a level by dt</span></div>
<div class="line"><a name="l00682"></a><span class="lineno"> 682</span>  <span class="comment">// includes a recursive call for finer levels</span></div>
<div class="line"><a name="l00683"></a><span class="lineno"> 683</span>  <span class="keywordtype">void</span> <a class="code" href="classERF.html#aff397ccf7eb99c51d7c705a35e85ec5f">timeStep</a> (<span class="keywordtype">int</span> lev, <a class="code" href="ERF__ShocInterface_8H.html#ab8a9d2a7cbf2084043f890c3d0a68f57">amrex::Real</a> time, <span class="keywordtype">int</span> iteration);</div>
<div class="line"><a name="l00684"></a><span class="lineno"> 684</span>  </div>
<div class="line"><a name="l00685"></a><span class="lineno"> 685</span>  <span class="comment">// advance a single level for a single time step</span></div>
<div class="line"><a name="l00686"></a><span class="lineno"> 686</span>  <span class="keywordtype">void</span> <a class="code" href="classERF.html#a47413fe5588f7dd71a1d5087a9e804f9">Advance</a> (<span class="keywordtype">int</span> lev, <a class="code" href="ERF__ShocInterface_8H.html#ab8a9d2a7cbf2084043f890c3d0a68f57">amrex::Real</a> time, <a class="code" href="ERF__ShocInterface_8H.html#ab8a9d2a7cbf2084043f890c3d0a68f57">amrex::Real</a> dt_lev, <span class="keywordtype">int</span> iteration, <span class="keywordtype">int</span> ncycle);</div>
<div class="line"><a name="l00687"></a><span class="lineno"> 687</span> <span class="comment"></span> </div>
<div class="line"><a name="l00688"></a><span class="lineno"> 688</span> <span class="comment"> //! Initialize HSE</span></div>
<div class="line"><a name="l00689"></a><span class="lineno"> 689</span> <span class="comment"></span> <span class="keywordtype">void</span> <a class="code" href="classERF.html#a92c020bfaa43e40fb5ffc449427a0318">initHSE</a> ();</div>
<div class="line"><a name="l00690"></a><span class="lineno"> 690</span>  <span class="keywordtype">void</span> <a class="code" href="classERF.html#a92c020bfaa43e40fb5ffc449427a0318">initHSE</a> (<span class="keywordtype">int</span> lev);</div>
<div class="line"><a name="l00691"></a><span class="lineno"> 691</span> <span class="comment"></span> </div>
<div class="line"><a name="l00692"></a><span class="lineno"> 692</span> <span class="comment"> //! Initialize Rayleigh damping profiles at a level</span></div>
<div class="line"><a name="l00693"></a><span class="lineno"> 693</span> <span class="comment"></span> <span class="keywordtype">void</span> <a class="code" href="classERF.html#a7588352f12a86f303d550b4fe5223db3">initRayleigh_at_level</a> (<span class="keyword">const</span> <span class="keywordtype">int</span>& lev);</div>
<div class="line"><a name="l00694"></a><span class="lineno"> 694</span> <span class="comment"></span> </div>
<div class="line"><a name="l00695"></a><span class="lineno"> 695</span> <span class="comment"> //! Initialize sponge profiles</span></div>
<div class="line"><a name="l00696"></a><span class="lineno"> 696</span> <span class="comment"></span> <span class="keywordtype">void</span> <a class="code" href="classERF.html#ab26ec4f9c35a519063af2a938c1012e6">initSponge</a> ();</div>
<div class="line"><a name="l00697"></a><span class="lineno"> 697</span> <span class="comment"></span> </div>
<div class="line"><a name="l00698"></a><span class="lineno"> 698</span> <span class="comment"> //! Set Rayleigh mean profiles from input sounding</span></div>
<div class="line"><a name="l00699"></a><span class="lineno"> 699</span> <span class="comment"></span> <span class="keywordtype">void</span> <a class="code" href="classERF.html#a0877d5a0263641c13b92d2d16f47b689">setRayleighRefFromSounding</a> (<span class="keywordtype">bool</span> restarting);</div>
<div class="line"><a name="l00700"></a><span class="lineno"> 700</span> <span class="comment"></span> </div>
<div class="line"><a name="l00701"></a><span class="lineno"> 701</span> <span class="comment"> //! Set sponge mean profiles from input sounding</span></div>
<div class="line"><a name="l00702"></a><span class="lineno"> 702</span> <span class="comment"></span> <span class="keywordtype">void</span> <a class="code" href="classERF.html#ae27a45d751287a887769df20dea60633">setSpongeRefFromSounding</a> (<span class="keywordtype">bool</span> restarting);</div>
<div class="line"><a name="l00703"></a><span class="lineno"> 703</span>  </div>
<div class="line"><a name="l00704"></a><span class="lineno"> 704</span>  <span class="comment">// a wrapper for estTimeStep()</span></div>
<div class="line"><a name="l00705"></a><span class="lineno"> 705</span>  <span class="keywordtype">void</span> <a class="code" href="classERF.html#aa38639155e79bab8a0c283aa6e7afa81">ComputeDt</a> (<span class="keywordtype">int</span> step = -1);</div>
<div class="line"><a name="l00706"></a><span class="lineno"> 706</span>  </div>
<div class="line"><a name="l00707"></a><span class="lineno"> 707</span>  <span class="comment">// get plotfile name</span></div>
<div class="line"><a name="l00708"></a><span class="lineno"><a class="line" href="classERF.html#a54f6c5d799e51521ad10bb57d29d0c44"> 708</a></span>  [[nodiscard]] std::string <a class="code" href="classERF.html#a54f6c5d799e51521ad10bb57d29d0c44">PlotFileName</a> (<span class="keywordtype">int</span> lev) <span class="keyword">const</span>;</div>
<div class="line"><a name="l00709"></a><span class="lineno"> 709</span>  </div>
<div class="line"><a name="l00710"></a><span class="lineno"> 710</span>  <span class="comment">// set plotfile variable names</span></div>
<div class="line"><a name="l00711"></a><span class="lineno"> 711</span>  <span class="keyword">static</span> amrex::Vector<std::string> <a class="code" href="classERF.html#a2dcd22cb915d923c687f60267f44542b">PlotFileVarNames</a> (amrex::Vector<std::string> plot_var_names);</div>
<div class="line"><a name="l00712"></a><span class="lineno"> 712</span>  </div>
<div class="line"><a name="l00713"></a><span class="lineno"> 713</span>  <span class="comment">// set which variables and derived quantities go into plotfiles</span></div>
<div class="line"><a name="l00714"></a><span class="lineno"> 714</span>  <span class="keywordtype">void</span> <a class="code" href="classERF.html#a1fcb440c67da60c86372aec1fe871cb7">setPlotVariables</a> (<span class="keyword">const</span> std::string& pp_plot_var_names, amrex::Vector<std::string>& plot_var_names);</div>
<div class="line"><a name="l00715"></a><span class="lineno"> 715</span>  <span class="keywordtype">void</span> <a class="code" href="classERF.html#a5fa03e1202cf07d822b399a972f967ec">setPlotVariables2D</a> (<span class="keyword">const</span> std::string& pp_plot_var_names, amrex::Vector<std::string>& plot_var_names);</div>
<div class="line"><a name="l00716"></a><span class="lineno"> 716</span>  <span class="comment">// append variables to plot</span></div>
<div class="line"><a name="l00717"></a><span class="lineno"> 717</span>  <span class="keywordtype">void</span> <a class="code" href="classERF.html#a7758f75dc7c9029eddc4c58ac0567654">appendPlotVariables</a> (<span class="keyword">const</span> std::string& pp_plot_var_names, amrex::Vector<std::string>& plot_var_names);</div>
<div class="line"><a name="l00718"></a><span class="lineno"> 718</span>  </div>
<div class="line"><a name="l00719"></a><span class="lineno"> 719</span>  <span class="keywordtype">void</span> <a class="code" href="classERF.html#a87d5810a51d3eee73be510665803e68c">setSubVolVariables</a> (<span class="keyword">const</span> std::string& pp_subvol_var_names, amrex::Vector<std::string>& subvol_var_names);</div>
<div class="line"><a name="l00720"></a><span class="lineno"> 720</span>  </div>
<div class="line"><a name="l00721"></a><span class="lineno"> 721</span> <span class="preprocessor">#ifdef ERF_USE_NETCDF</span><span class="comment"></span></div>
<div class="line"><a name="l00722"></a><span class="lineno"> 722</span> <span class="comment"> //! Create 1D vertical column output for coupling</span></div>
<div class="line"><a name="l00723"></a><span class="lineno"> 723</span> <span class="comment"></span> <span class="keywordtype">void</span> createNCColumnFile (<span class="keywordtype">int</span> lev,</div>
<div class="line"><a name="l00724"></a><span class="lineno"> 724</span>  <span class="keyword">const</span> std::string& colfile_name, <a class="code" href="ERF__ShocInterface_8H.html#ab8a9d2a7cbf2084043f890c3d0a68f57">amrex::Real</a> xloc, <a class="code" href="ERF__ShocInterface_8H.html#ab8a9d2a7cbf2084043f890c3d0a68f57">amrex::Real</a> yloc);</div>
<div class="line"><a name="l00725"></a><span class="lineno"> 725</span>  </div>
<div class="line"><a name="l00726"></a><span class="lineno"> 726</span>  <span class="comment">// Copy from the NC*fabs into the MultiFabs holding the boundary data</span></div>
<div class="line"><a name="l00727"></a><span class="lineno"> 727</span>  <span class="keywordtype">void</span> init_from_wrfbdy (amrex::Vector<amrex::FArrayBox*> x_vel_lateral,</div>
<div class="line"><a name="l00728"></a><span class="lineno"> 728</span>  amrex::Vector<amrex::FArrayBox*> y_vel_lateral,</div>
<div class="line"><a name="l00729"></a><span class="lineno"> 729</span>  amrex::Vector<amrex::FArrayBox*> z_vel_lateral,</div>
<div class="line"><a name="l00730"></a><span class="lineno"> 730</span>  amrex::Vector<amrex::FArrayBox*> T_lateral);</div>
<div class="line"><a name="l00731"></a><span class="lineno"> 731</span>  </div>
<div class="line"><a name="l00732"></a><span class="lineno"> 732</span>  <span class="keyword">static</span> <a class="code" href="ERF__ShocInterface_8H.html#ab8a9d2a7cbf2084043f890c3d0a68f57">amrex::Real</a> start_bdy_time;</div>
<div class="line"><a name="l00733"></a><span class="lineno"> 733</span>  <span class="keyword">static</span> <a class="code" href="ERF__ShocInterface_8H.html#ab8a9d2a7cbf2084043f890c3d0a68f57">amrex::Real</a> final_bdy_time;</div>
<div class="line"><a name="l00734"></a><span class="lineno"> 734</span>  </div>
<div class="line"><a name="l00735"></a><span class="lineno"> 735</span>  <span class="keyword">static</span> <a class="code" href="ERF__ShocInterface_8H.html#ab8a9d2a7cbf2084043f890c3d0a68f57">amrex::Real</a> start_low_time;</div>
<div class="line"><a name="l00736"></a><span class="lineno"> 736</span>  <span class="keyword">static</span> <a class="code" href="ERF__ShocInterface_8H.html#ab8a9d2a7cbf2084043f890c3d0a68f57">amrex::Real</a> final_low_time;</div>
<div class="line"><a name="l00737"></a><span class="lineno"> 737</span>  </div>
<div class="line"><a name="l00738"></a><span class="lineno"> 738</span>  <span class="keyword">static</span> <a class="code" href="ERF__ShocInterface_8H.html#ab8a9d2a7cbf2084043f890c3d0a68f57">amrex::Real</a> bdy_time_interval;</div>
<div class="line"><a name="l00739"></a><span class="lineno"> 739</span>  <span class="keyword">static</span> <a class="code" href="ERF__ShocInterface_8H.html#ab8a9d2a7cbf2084043f890c3d0a68f57">amrex::Real</a> low_time_interval;</div>
<div class="line"><a name="l00740"></a><span class="lineno"> 740</span>  </div>
<div class="line"><a name="l00741"></a><span class="lineno"> 741</span>  <span class="comment">// *** *** FArrayBox's for holding the SURFACE data</span></div>
<div class="line"><a name="l00742"></a><span class="lineno"> 742</span>  <span class="comment">// amrex::IArrayBox NC_IVGTYP_fab; // Vegetation type (IVGTYP); Discrete numbers;</span></div>
<div class="line"><a name="l00743"></a><span class="lineno"> 743</span>  <span class="comment">// amrex::FArrayBox NC_z0_fab; // Surface Roughness, z0 = z0 (IVGTYP)</span></div>
<div class="line"><a name="l00744"></a><span class="lineno"> 744</span>  <span class="comment">// amrex::FArrayBox NC_PSFC_fab; // Surface pressure</span></div>
<div class="line"><a name="l00745"></a><span class="lineno"> 745</span>  </div>
<div class="line"><a name="l00746"></a><span class="lineno"> 746</span>  <span class="comment">// TODO: Clarify the relation between SST and TSK</span></div>
<div class="line"><a name="l00747"></a><span class="lineno"> 747</span>  <span class="comment">// amrex::FArrayBox NC_SST_fab; // Sea Surface Temperature; Defined even for land area</span></div>
<div class="line"><a name="l00748"></a><span class="lineno"> 748</span>  <span class="comment">// amrex::FArrayBox NC_TSK_fab; // Surface Skin Temperature; Appears to be same as SST...</span></div>
<div class="line"><a name="l00749"></a><span class="lineno"> 749</span>  </div>
<div class="line"><a name="l00750"></a><span class="lineno"> 750</span>  <span class="comment">// Vectors (over time) of Vector (over variables) of FArrayBoxs for holding the data read from the wrfbdy NetCDF file</span></div>
<div class="line"><a name="l00751"></a><span class="lineno"> 751</span>  amrex::Vector<amrex::Vector<amrex::FArrayBox>> bdy_data_xlo;</div>
<div class="line"><a name="l00752"></a><span class="lineno"> 752</span>  amrex::Vector<amrex::Vector<amrex::FArrayBox>> bdy_data_xhi;</div>
<div class="line"><a name="l00753"></a><span class="lineno"> 753</span>  amrex::Vector<amrex::Vector<amrex::FArrayBox>> bdy_data_ylo;</div>
<div class="line"><a name="l00754"></a><span class="lineno"> 754</span>  amrex::Vector<amrex::Vector<amrex::FArrayBox>> bdy_data_yhi;</div>
<div class="line"><a name="l00755"></a><span class="lineno"> 755</span>  </div>
<div class="line"><a name="l00756"></a><span class="lineno"> 756</span>  amrex::Vector<amrex::Vector<amrex::FArrayBox>> low_data_zlo;</div>
<div class="line"><a name="l00757"></a><span class="lineno"> 757</span>  </div>
<div class="line"><a name="l00758"></a><span class="lineno"> 758</span>  <span class="comment">// Maximum value of terrain read in from wrfinput at level 0</span></div>
<div class="line"><a name="l00759"></a><span class="lineno"> 759</span>  <a class="code" href="ERF__ShocInterface_8H.html#ab8a9d2a7cbf2084043f890c3d0a68f57">amrex::Real</a> z_top = <a class="code" href="ERF__Constants_8H.html#a6b7c73c34b8e65d792a04602474f08b5">zero</a>;</div>
<div class="line"><a name="l00760"></a><span class="lineno"> 760</span>  </div>
<div class="line"><a name="l00761"></a><span class="lineno"> 761</span> <span class="preprocessor">#endif </span><span class="comment">// ERF_USE_NETCDF</span></div>
<div class="line"><a name="l00762"></a><span class="lineno"> 762</span>  </div>
<div class="line"><a name="l00763"></a><span class="lineno"><a class="line" href="classERF.html#aec0145fc1c92b03f63475bbbc67fd241"> 763</a></span>  amrex::Vector<std::unique_ptr<amrex::MultiFab>> <a class="code" href="classERF.html#aec0145fc1c92b03f63475bbbc67fd241">lat_m</a>, <a class="code" href="classERF.html#aa4eeefdc35abb7e7d3f6472d3f2a454e">lon_m</a>; <span class="comment">// Latitude and Longitude on the grid</span></div>
<div class="line"><a name="l00764"></a><span class="lineno"> 764</span>  </div>
<div class="line"><a name="l00765"></a><span class="lineno"><a class="line" href="classERF.html#ad6a92272a5ad07f176892de07353f268"> 765</a></span>  amrex::Vector<std::unique_ptr<amrex::MultiFab>> <a class="code" href="classERF.html#ab54f3fc49bad059469da4e34c82296a6">sinPhi_m</a>, <a class="code" href="classERF.html#ad6a92272a5ad07f176892de07353f268">cosPhi_m</a>; <span class="comment">// Coriolis factors on the grid</span></div>
<div class="line"><a name="l00766"></a><span class="lineno"> 766</span>  </div>
<div class="line"><a name="l00767"></a><span class="lineno"> 767</span>  <span class="comment">// Struct for working with the sounding data we take as an input</span></div>
<div class="line"><a name="l00768"></a><span class="lineno"><a class="line" href="classERF.html#a83572d8dfad51158945b4a5ab06b2f72"> 768</a></span>  <a class="code" href="structInputSoundingData.html">InputSoundingData</a> <a class="code" href="classERF.html#a83572d8dfad51158945b4a5ab06b2f72">input_sounding_data</a>;</div>
<div class="line"><a name="l00769"></a><span class="lineno"> 769</span>  </div>
<div class="line"><a name="l00770"></a><span class="lineno"> 770</span>  <span class="comment">// Struct for working with the sponge data we take as an input</span></div>
<div class="line"><a name="l00771"></a><span class="lineno"><a class="line" href="classERF.html#a8cb877a46fd94b5294425299dcb9cbaf"> 771</a></span>  <a class="code" href="structInputSpongeData.html">InputSpongeData</a> <a class="code" href="classERF.html#a8cb877a46fd94b5294425299dcb9cbaf">input_sponge_data</a>;</div>
<div class="line"><a name="l00772"></a><span class="lineno"> 772</span>  </div>
<div class="line"><a name="l00773"></a><span class="lineno"> 773</span>  <span class="comment">// Vector (6 planes) of DeviceVectors (ncell in plane) for Dirichlet BC data</span></div>
<div class="line"><a name="l00774"></a><span class="lineno"><a class="line" href="classERF.html#a902f60d94be5eaf86361d1d5ad942105"> 774</a></span>  amrex::Vector<amrex::Gpu::DeviceVector<amrex::Real>> <a class="code" href="classERF.html#a902f60d94be5eaf86361d1d5ad942105">xvel_bc_data</a>;</div>
<div class="line"><a name="l00775"></a><span class="lineno"><a class="line" href="classERF.html#ae5e40fcd6dd76c80d0b5b09be5baef97"> 775</a></span>  amrex::Vector<amrex::Gpu::DeviceVector<amrex::Real>> <a class="code" href="classERF.html#ae5e40fcd6dd76c80d0b5b09be5baef97">yvel_bc_data</a>;</div>
<div class="line"><a name="l00776"></a><span class="lineno"><a class="line" href="classERF.html#ae08c25dcf643c6ef39f27d7dd0cb7423"> 776</a></span>  amrex::Vector<amrex::Gpu::DeviceVector<amrex::Real>> <a class="code" href="classERF.html#ae08c25dcf643c6ef39f27d7dd0cb7423">zvel_bc_data</a>;</div>
<div class="line"><a name="l00777"></a><span class="lineno"><a class="line" href="classERF.html#a67c86c65b27f8ceee58b5ca989116e14"> 777</a></span>  amrex::Vector<amrex::Gpu::DeviceVector<amrex::Real>> <a class="code" href="classERF.html#a67c86c65b27f8ceee58b5ca989116e14">th_bc_data</a>;</div>
<div class="line"><a name="l00778"></a><span class="lineno"> 778</span>  </div>
<div class="line"><a name="l00779"></a><span class="lineno"> 779</span>  <span class="comment">// Function to read and populate above vectors (if input file exists)</span></div>
<div class="line"><a name="l00780"></a><span class="lineno"> 780</span>  <span class="keywordtype">void</span> <a class="code" href="classERF.html#a3079a30cce7e1a01d5c9705f393b5a63">init_Dirichlet_bc_data</a> (<span class="keyword">const</span> std::string input_file);</div>
<div class="line"><a name="l00781"></a><span class="lineno"> 781</span>  </div>
<div class="line"><a name="l00782"></a><span class="lineno"> 782</span>  <span class="comment">// Read the file passed to amr.restart and use it as an initial condition for</span></div>
<div class="line"><a name="l00783"></a><span class="lineno"> 783</span>  <span class="comment">// the current simulation. Supports a different number of components and</span></div>
<div class="line"><a name="l00784"></a><span class="lineno"> 784</span>  <span class="comment">// ghost cells.</span></div>
<div class="line"><a name="l00785"></a><span class="lineno"><a class="line" href="classERF.html#a2e1874d47d95c7c858c2a2336fd0eee6"> 785</a></span>  <span class="keywordtype">void</span> <a class="code" href="classERF.html#a2e1874d47d95c7c858c2a2336fd0eee6">InitializeFromFile</a> ();</div>
<div class="line"><a name="l00786"></a><span class="lineno"> 786</span>  </div>
<div class="line"><a name="l00787"></a><span class="lineno"> 787</span>  <span class="comment">// Initialize the new-time data at a level from the initial_data MultiFab</span></div>
<div class="line"><a name="l00788"></a><span class="lineno"><a class="line" href="classERF.html#a914f576acc2d1a54203a220cce10df62"> 788</a></span>  <span class="keywordtype">void</span> <a class="code" href="classERF.html#a914f576acc2d1a54203a220cce10df62">InitializeLevelFromData</a> (<span class="keywordtype">int</span> lev, <span class="keyword">const</span> amrex::MultiFab& initial_data);</div>
<div class="line"><a name="l00789"></a><span class="lineno"> 789</span>  </div>
<div class="line"><a name="l00790"></a><span class="lineno"> 790</span>  <span class="comment">// utility to skip to next line in Header</span></div>
<div class="line"><a name="l00791"></a><span class="lineno"> 791</span>  <span class="keyword">static</span> <span class="keywordtype">void</span> <a class="code" href="classERF.html#aaee255b031e63bd9b5807f6612739dbd">GotoNextLine</a> (std::istream& is);</div>
<div class="line"><a name="l00792"></a><span class="lineno"> 792</span>  </div>
<div class="line"><a name="l00793"></a><span class="lineno"> 793</span>  <span class="comment">// Single level functions called by advance()</span></div>
<div class="line"><a name="l00794"></a><span class="lineno"><a class="line" href="classERF.html#adca0cddd75f33ecb5fb8e0ef9601dae4"> 794</a></span>  <span class="keywordtype">void</span> <a class="code" href="classERF.html#adca0cddd75f33ecb5fb8e0ef9601dae4">post_update</a> (amrex::MultiFab& state_mf, <a class="code" href="ERF__ShocInterface_8H.html#ab8a9d2a7cbf2084043f890c3d0a68f57">amrex::Real</a> time, <span class="keyword">const</span> amrex::Geometry& geom);</div>
<div class="line"><a name="l00795"></a><span class="lineno"><a class="line" href="classERF.html#a76600d7a4a0451c9727d2cc57dae4220"> 795</a></span>  <span class="keywordtype">void</span> <a class="code" href="classERF.html#a76600d7a4a0451c9727d2cc57dae4220">fill_rhs</a> (amrex::MultiFab& rhs_mf, <span class="keyword">const</span> amrex::MultiFab& state_mf, <a class="code" href="ERF__ShocInterface_8H.html#ab8a9d2a7cbf2084043f890c3d0a68f57">amrex::Real</a> time, <span class="keyword">const</span> amrex::Geometry& geom);</div>
<div class="line"><a name="l00796"></a><span class="lineno"> 796</span> <span class="comment"></span> </div>
<div class="line"><a name="l00797"></a><span class="lineno"> 797</span> <span class="comment"> ////////////////</span></div>
<div class="line"><a name="l00798"></a><span class="lineno"> 798</span> <span class="comment"></span> <span class="comment">// private data members</span></div>
<div class="line"><a name="l00799"></a><span class="lineno"> 799</span>  </div>
<div class="line"><a name="l00800"></a><span class="lineno"><a class="line" href="classERF.html#a60e8cb933f237903e3fbcd6376c26db0"> 800</a></span>  std::unique_ptr<ProblemBase> <a class="code" href="classERF.html#a60e8cb933f237903e3fbcd6376c26db0">prob</a> = <span class="keyword">nullptr</span>; <span class="comment">// problem-specific functions</span></div>
<div class="line"><a name="l00801"></a><span class="lineno"> 801</span>  </div>
<div class="line"><a name="l00802"></a><span class="lineno"><a class="line" href="classERF.html#adcd9f23975ffa605247b41d391c2a2f0"> 802</a></span>  amrex::Vector<int> <a class="code" href="classERF.html#adcd9f23975ffa605247b41d391c2a2f0">num_boxes_at_level</a>; <span class="comment">// how many boxes specified at each level by tagging criteria</span></div>
<div class="line"><a name="l00803"></a><span class="lineno"><a class="line" href="classERF.html#a610a988f46e0496e6dbd0471ae817f75"> 803</a></span>  amrex::Vector<int> <a class="code" href="classERF.html#a610a988f46e0496e6dbd0471ae817f75">num_files_at_level</a>; <span class="comment">// how many wrfinput files specified at each level</span></div>
<div class="line"><a name="l00804"></a><span class="lineno"><a class="line" href="classERF.html#a050dbd236c9bf246554a53008e09f683"> 804</a></span>  amrex::Vector<amrex::Vector<amrex::Box>> <a class="code" href="classERF.html#a050dbd236c9bf246554a53008e09f683">boxes_at_level</a>; <span class="comment">// the boxes specified at each level by tagging criteria</span></div>
<div class="line"><a name="l00805"></a><span class="lineno"> 805</span>  </div>
<div class="line"><a name="l00806"></a><span class="lineno"><a class="line" href="classERF.html#aefa640a036c25b7b770e88a5f838eb2a"> 806</a></span>  amrex::Vector<int> <a class="code" href="classERF.html#aefa640a036c25b7b770e88a5f838eb2a">istep</a>; <span class="comment">// which step?</span></div>
<div class="line"><a name="l00807"></a><span class="lineno"><a class="line" href="classERF.html#aa3db2dd1b65310c66c4038650c22aaee"> 807</a></span>  amrex::Vector<int> <a class="code" href="classERF.html#aa3db2dd1b65310c66c4038650c22aaee">nsubsteps</a>; <span class="comment">// how many substeps on each level?</span></div>
<div class="line"><a name="l00808"></a><span class="lineno"> 808</span>  </div>
<div class="line"><a name="l00809"></a><span class="lineno"> 809</span>  <span class="comment">// keep track of old time, new time, and time step at each level</span></div>
<div class="line"><a name="l00810"></a><span class="lineno"><a class="line" href="classERF.html#a65741b6379d273c19a25cf48bb947614"> 810</a></span>  amrex::Vector<amrex::Real> <a class="code" href="classERF.html#a65741b6379d273c19a25cf48bb947614">t_new</a>;</div>
<div class="line"><a name="l00811"></a><span class="lineno"><a class="line" href="classERF.html#a7085d7d5fc94a0f84efc06957267d58e"> 811</a></span>  amrex::Vector<amrex::Real> <a class="code" href="classERF.html#a7085d7d5fc94a0f84efc06957267d58e">t_old</a>;</div>
<div class="line"><a name="l00812"></a><span class="lineno"><a class="line" href="classERF.html#ad34bae243fdb6c3029f5abe4fb4bca2d"> 812</a></span>  amrex::Vector<amrex::Real> <a class="code" href="classERF.html#ad34bae243fdb6c3029f5abe4fb4bca2d">dt</a>;</div>
<div class="line"><a name="l00813"></a><span class="lineno"><a class="line" href="classERF.html#a3cf7cb2e51eb7b69cb4079ffc6722459"> 813</a></span>  amrex::Vector<long> <a class="code" href="classERF.html#a3cf7cb2e51eb7b69cb4079ffc6722459">dt_mri_ratio</a>;</div>
<div class="line"><a name="l00814"></a><span class="lineno"> 814</span>  </div>
<div class="line"><a name="l00815"></a><span class="lineno"> 815</span> <span class="preprocessor">#ifndef ERF_USE_MULTIBLOCK</span></div>
<div class="line"><a name="l00816"></a><span class="lineno"> 816</span>  <span class="comment">// Array of multifabs to store the solution at each level of refinement;</span></div>
<div class="line"><a name="l00817"></a><span class="lineno"> 817</span>  <span class="comment">// after advancing a level we use "swap".</span></div>
<div class="line"><a name="l00818"></a><span class="lineno"><a class="line" href="classERF.html#a1204ca4dc5d79f5da191ffbe09dfab9b"> 818</a></span>  amrex::Vector<amrex::Vector<amrex::MultiFab> > <a class="code" href="classERF.html#a1204ca4dc5d79f5da191ffbe09dfab9b">vars_new</a>;</div>
<div class="line"><a name="l00819"></a><span class="lineno"><a class="line" href="classERF.html#af31e928baa970a1507dfb0233b352542"> 819</a></span>  amrex::Vector<amrex::Vector<amrex::MultiFab> > <a class="code" href="classERF.html#af31e928baa970a1507dfb0233b352542">vars_old</a>;</div>
<div class="line"><a name="l00820"></a><span class="lineno"> 820</span>  </div>
<div class="line"><a name="l00821"></a><span class="lineno"> 821</span>  <span class="comment">// Pressure gradient at each level</span></div>
<div class="line"><a name="l00822"></a><span class="lineno"><a class="line" href="classERF.html#a29ce17220e488eb840abc53966c34d46"> 822</a></span>  amrex::Vector<amrex::Vector<amrex::MultiFab> > <a class="code" href="classERF.html#a29ce17220e488eb840abc53966c34d46">gradp</a>;</div>
<div class="line"><a name="l00823"></a><span class="lineno"> 823</span>  </div>
<div class="line"><a name="l00824"></a><span class="lineno"> 824</span>  <span class="comment">// Velocity time averaged field</span></div>
<div class="line"><a name="l00825"></a><span class="lineno"><a class="line" href="classERF.html#a3e146164ca6929ec6d4984b6a3f43c81"> 825</a></span>  amrex::Vector<std::unique_ptr<amrex::MultiFab>> <a class="code" href="classERF.html#a3e146164ca6929ec6d4984b6a3f43c81">vel_t_avg</a>;</div>
<div class="line"><a name="l00826"></a><span class="lineno"><a class="line" href="classERF.html#a6837423e9248e923fcaa1987b59d8160"> 826</a></span>  amrex::Vector<amrex::Real> <a class="code" href="classERF.html#a6837423e9248e923fcaa1987b59d8160">t_avg_cnt</a>;</div>
<div class="line"><a name="l00827"></a><span class="lineno"> 827</span> <span class="preprocessor">#endif</span></div>
<div class="line"><a name="l00828"></a><span class="lineno"><a class="line" href="classERF.html#a09d0fb2bd609c898a665d9530a744585"> 828</a></span>  amrex::Vector<std::unique_ptr<MRISplitIntegrator<amrex::Vector<amrex::MultiFab> > > > <a class="code" href="classERF.html#a09d0fb2bd609c898a665d9530a744585">mri_integrator_mem</a>;</div>
<div class="line"><a name="l00829"></a><span class="lineno"> 829</span>  </div>
<div class="line"><a name="l00830"></a><span class="lineno"> 830</span>  <span class="comment">// Used for anelastic or when we impose an initial projection</span></div>
<div class="line"><a name="l00831"></a><span class="lineno"><a class="line" href="classERF.html#a0c5206542d4193bb687f5271be6fe5e5"> 831</a></span>  amrex::Vector<amrex::MultiFab> <a class="code" href="classERF.html#a0c5206542d4193bb687f5271be6fe5e5">pp_inc</a>;</div>
<div class="line"><a name="l00832"></a><span class="lineno"> 832</span>  </div>
<div class="line"><a name="l00833"></a><span class="lineno"> 833</span>  <span class="comment">// Used only for fast substepping</span></div>
<div class="line"><a name="l00834"></a><span class="lineno"><a class="line" href="classERF.html#a165e23ed896c1985bcfa0f9037991801"> 834</a></span>  amrex::Vector<amrex::MultiFab> <a class="code" href="classERF.html#a165e23ed896c1985bcfa0f9037991801">lagged_delta_rt</a>;</div>
<div class="line"><a name="l00835"></a><span class="lineno"><a class="line" href="classERF.html#a0be7f38e1bb70dae91377a4fc7ecab40"> 835</a></span>  amrex::Vector<amrex::MultiFab> <a class="code" href="classERF.html#a0be7f38e1bb70dae91377a4fc7ecab40">avg_xmom</a>;</div>
<div class="line"><a name="l00836"></a><span class="lineno"><a class="line" href="classERF.html#ae287ff9d63638e63c8222747beebda9c"> 836</a></span>  amrex::Vector<amrex::MultiFab> <a class="code" href="classERF.html#ae287ff9d63638e63c8222747beebda9c">avg_ymom</a>;</div>
<div class="line"><a name="l00837"></a><span class="lineno"><a class="line" href="classERF.html#afcf3ee7571e17210d318b86f39474038"> 837</a></span>  amrex::Vector<amrex::MultiFab> <a class="code" href="classERF.html#afcf3ee7571e17210d318b86f39474038">avg_zmom</a>;</div>
<div class="line"><a name="l00838"></a><span class="lineno"> 838</span>  </div>
<div class="line"><a name="l00839"></a><span class="lineno"> 839</span>  <span class="comment">// Vector over levels of routines to impose physical boundary conditions</span></div>
<div class="line"><a name="l00840"></a><span class="lineno"><a class="line" href="classERF.html#a2e9b04043853d25f2d76edbc0bed2e72"> 840</a></span>  amrex::Vector<std::unique_ptr<ERFPhysBCFunct_cons>> <a class="code" href="classERF.html#a2e9b04043853d25f2d76edbc0bed2e72">physbcs_cons</a>;</div>
<div class="line"><a name="l00841"></a><span class="lineno"><a class="line" href="classERF.html#a64e55e5ae9df06433146db657eb9e72e"> 841</a></span>  amrex::Vector<std::unique_ptr<ERFPhysBCFunct_u>> <a class="code" href="classERF.html#a64e55e5ae9df06433146db657eb9e72e">physbcs_u</a>;</div>
<div class="line"><a name="l00842"></a><span class="lineno"><a class="line" href="classERF.html#a79231b5cfd4576a742e46ae0082b5121"> 842</a></span>  amrex::Vector<std::unique_ptr<ERFPhysBCFunct_v>> <a class="code" href="classERF.html#a79231b5cfd4576a742e46ae0082b5121">physbcs_v</a>;</div>
<div class="line"><a name="l00843"></a><span class="lineno"><a class="line" href="classERF.html#a45c8ecd777f47732993777a0afb8e140"> 843</a></span>  amrex::Vector<std::unique_ptr<ERFPhysBCFunct_w>> <a class="code" href="classERF.html#a45c8ecd777f47732993777a0afb8e140">physbcs_w</a>;</div>
<div class="line"><a name="l00844"></a><span class="lineno"><a class="line" href="classERF.html#af4e7dc93dae16aa2cc94bbb20b699a6f"> 844</a></span>  amrex::Vector<std::unique_ptr<ERFPhysBCFunct_base>> <a class="code" href="classERF.html#af4e7dc93dae16aa2cc94bbb20b699a6f">physbcs_base</a>;</div>
<div class="line"><a name="l00845"></a><span class="lineno"> 845</span>  </div>
<div class="line"><a name="l00846"></a><span class="lineno"> 846</span>  <span class="comment">// Store primitive variable for MOST BC</span></div>
<div class="line"><a name="l00847"></a><span class="lineno"><a class="line" href="classERF.html#a71629ae2fda396472198691b75d83b2e"> 847</a></span>  amrex::Vector<std::unique_ptr<amrex::MultiFab>> <a class="code" href="classERF.html#a71629ae2fda396472198691b75d83b2e">Theta_prim</a>;</div>
<div class="line"><a name="l00848"></a><span class="lineno"><a class="line" href="classERF.html#a521d1faf157e3bccc86c0f26ee923576"> 848</a></span>  amrex::Vector<std::unique_ptr<amrex::MultiFab>> <a class="code" href="classERF.html#a521d1faf157e3bccc86c0f26ee923576">Qv_prim</a>;</div>
<div class="line"><a name="l00849"></a><span class="lineno"><a class="line" href="classERF.html#a57d8432920785f8e58cf11a3232d76b5"> 849</a></span>  amrex::Vector<std::unique_ptr<amrex::MultiFab>> <a class="code" href="classERF.html#a57d8432920785f8e58cf11a3232d76b5">Qr_prim</a>;</div>
<div class="line"><a name="l00850"></a><span class="lineno"> 850</span>  </div>
<div class="line"><a name="l00851"></a><span class="lineno"> 851</span>  <span class="comment">// Scratch space for time integrator</span></div>
<div class="line"><a name="l00852"></a><span class="lineno"><a class="line" href="classERF.html#a6eecc44323f77917c95869928284f61d"> 852</a></span>  amrex::Vector<amrex::MultiFab> <a class="code" href="classERF.html#a6eecc44323f77917c95869928284f61d">rU_old</a>;</div>
<div class="line"><a name="l00853"></a><span class="lineno"><a class="line" href="classERF.html#a01f3db32272f53dc68025f0a98195e57"> 853</a></span>  amrex::Vector<amrex::MultiFab> <a class="code" href="classERF.html#a01f3db32272f53dc68025f0a98195e57">rU_new</a>;</div>
<div class="line"><a name="l00854"></a><span class="lineno"><a class="line" href="classERF.html#aeb64e3b4def989ce68d873aefeed5e0e"> 854</a></span>  amrex::Vector<amrex::MultiFab> <a class="code" href="classERF.html#aeb64e3b4def989ce68d873aefeed5e0e">rV_old</a>;</div>
<div class="line"><a name="l00855"></a><span class="lineno"><a class="line" href="classERF.html#a54e37988486ef96e55e84bd8e91bb688"> 855</a></span>  amrex::Vector<amrex::MultiFab> <a class="code" href="classERF.html#a54e37988486ef96e55e84bd8e91bb688">rV_new</a>;</div>
<div class="line"><a name="l00856"></a><span class="lineno"><a class="line" href="classERF.html#ac1fa56ec90f44e3cdf487af46804163f"> 856</a></span>  amrex::Vector<amrex::MultiFab> <a class="code" href="classERF.html#ac1fa56ec90f44e3cdf487af46804163f">rW_old</a>;</div>
<div class="line"><a name="l00857"></a><span class="lineno"><a class="line" href="classERF.html#aa46c0b0d20525aed10f447923e54dde7"> 857</a></span>  amrex::Vector<amrex::MultiFab> <a class="code" href="classERF.html#aa46c0b0d20525aed10f447923e54dde7">rW_new</a>;</div>
<div class="line"><a name="l00858"></a><span class="lineno"> 858</span>  </div>
<div class="line"><a name="l00859"></a><span class="lineno"> 859</span>  <span class="comment">// amrex::Vector<amrex::MultiFab> xmom_crse_rhs;</span></div>
<div class="line"><a name="l00860"></a><span class="lineno"> 860</span>  <span class="comment">// amrex::Vector<amrex::MultiFab> ymom_crse_rhs;</span></div>
<div class="line"><a name="l00861"></a><span class="lineno"><a class="line" href="classERF.html#aaf7e8e28172eebdfe2224e4ee823310d"> 861</a></span>  amrex::Vector<amrex::MultiFab> <a class="code" href="classERF.html#aaf7e8e28172eebdfe2224e4ee823310d">zmom_crse_rhs</a>;</div>
<div class="line"><a name="l00862"></a><span class="lineno"> 862</span>  </div>
<div class="line"><a name="l00863"></a><span class="lineno"><a class="line" href="classERF.html#a4b7277d54649219f31fe286eee9d415a"> 863</a></span>  std::unique_ptr<Microphysics> <a class="code" href="classERF.html#a4b7277d54649219f31fe286eee9d415a">micro</a>;</div>
<div class="line"><a name="l00864"></a><span class="lineno"><a class="line" href="classERF.html#ae00126a9c2738bf6a6cbbe77321c9cfc"> 864</a></span>  amrex::Vector<amrex::Vector<amrex::MultiFab*>> <a class="code" href="classERF.html#ae00126a9c2738bf6a6cbbe77321c9cfc">qmoist</a>; <span class="comment">// (lev,ncomp) rain_accum, snow_accum, graup_accum</span></div>
<div class="line"><a name="l00865"></a><span class="lineno"> 865</span>  </div>
<div class="line"><a name="l00866"></a><span class="lineno"> 866</span>  <span class="comment">// Variables for wind farm parametrization models</span></div>
<div class="line"><a name="l00867"></a><span class="lineno"> 867</span>  </div>
<div class="line"><a name="l00868"></a><span class="lineno"> 868</span> <span class="preprocessor">#ifdef ERF_USE_WINDFARM</span></div>
<div class="line"><a name="l00869"></a><span class="lineno"> 869</span>  std::unique_ptr<WindFarm> windfarm;</div>
<div class="line"><a name="l00870"></a><span class="lineno"> 870</span>  amrex::Vector<amrex::MultiFab> Nturb;</div>
<div class="line"><a name="l00871"></a><span class="lineno"> 871</span>  amrex::Vector<amrex::MultiFab> vars_windfarm; <span class="comment">// Fitch: Vabs, Vabsdt, dudt, dvdt, dTKEdt</span></div>
<div class="line"><a name="l00872"></a><span class="lineno"> 872</span>  <span class="comment">// EWP: dudt, dvdt, dTKEdt</span></div>
<div class="line"><a name="l00873"></a><span class="lineno"> 873</span>  </div>
<div class="line"><a name="l00874"></a><span class="lineno"> 874</span>  amrex::Vector<amrex::MultiFab> SMark; <span class="comment">// A multifab that holds an integer corresponding</span></div>
<div class="line"><a name="l00875"></a><span class="lineno"> 875</span>  <span class="comment">// to the number of the wind turbine to sample</span></div>
<div class="line"><a name="l00876"></a><span class="lineno"> 876</span>  <span class="comment">// velocity upstream of the turbine</span></div>
<div class="line"><a name="l00877"></a><span class="lineno"> 877</span> <span class="preprocessor">#endif</span></div>
<div class="line"><a name="l00878"></a><span class="lineno"> 878</span>  </div>
<div class="line"><a name="l00879"></a><span class="lineno"><a class="line" href="classERF.html#ae0e9a78f120ba632d78cbf23c97b851c"> 879</a></span>  <a class="code" href="classLandSurface.html">LandSurface</a> <a class="code" href="classERF.html#ae0e9a78f120ba632d78cbf23c97b851c">lsm</a>;</div>
<div class="line"><a name="l00880"></a><span class="lineno"><a class="line" href="classERF.html#ab0b1f2c5d5f31bf8121133fc19d7eaf6"> 880</a></span>  amrex::Vector<std::string> <a class="code" href="classERF.html#ab0b1f2c5d5f31bf8121133fc19d7eaf6">lsm_data_name</a>; <span class="comment">// (ncomp) -- e.g., sw_dn_dir/dif_vis/nir, lw_dn, cos_zen</span></div>
<div class="line"><a name="l00881"></a><span class="lineno"><a class="line" href="classERF.html#ad03da3399e893728741fac33100ce476"> 881</a></span>  amrex::Vector<amrex::Vector<amrex::MultiFab*>> <a class="code" href="classERF.html#ad03da3399e893728741fac33100ce476">lsm_data</a>; <span class="comment">// (lev,ncomp) Data for LSM coupling</span></div>
<div class="line"><a name="l00882"></a><span class="lineno"><a class="line" href="classERF.html#a318fedec2b5e2fc6409cf70eba7c9935"> 882</a></span>  amrex::Vector<std::string> <a class="code" href="classERF.html#a318fedec2b5e2fc6409cf70eba7c9935">lsm_flux_name</a>; <span class="comment">// (ncomp) -- e.g., hfx3, q1fx3, tau13, tau23</span></div>
<div class="line"><a name="l00883"></a><span class="lineno"><a class="line" href="classERF.html#aa5f6a6ceae0087393f386649d8bbbc31"> 883</a></span>  amrex::Vector<amrex::Vector<amrex::MultiFab*>> <a class="code" href="classERF.html#aa5f6a6ceae0087393f386649d8bbbc31">lsm_flux</a>; <span class="comment">// (lev,ncomp) Fluxes from LSM needed by DYCORE</span></div>
<div class="line"><a name="l00884"></a><span class="lineno"> 884</span>  </div>
<div class="line"><a name="l00885"></a><span class="lineno"><a class="line" href="classERF.html#a609b41a1de9c6b28f23dcdc6843f9ef5"> 885</a></span>  amrex::Vector<std::unique_ptr<IRadiation>> <a class="code" href="classERF.html#a609b41a1de9c6b28f23dcdc6843f9ef5">rad</a>; <span class="comment">// Radiation model at each level</span></div>
<div class="line"><a name="l00886"></a><span class="lineno"><a class="line" href="classERF.html#afa4c3753628a106460dbb708277de511"> 886</a></span>  amrex::Vector<std::unique_ptr<amrex::MultiFab>> <a class="code" href="classERF.html#afa4c3753628a106460dbb708277de511">qheating_rates</a>; <span class="comment">// radiation heating rate source terms (SW, LW) (DYCORE)</span></div>
<div class="line"><a name="l00887"></a><span class="lineno"><a class="line" href="classERF.html#afbdb6ebd90d8f8a2af148d66c1f81be9"> 887</a></span>  amrex::Vector<std::unique_ptr<amrex::MultiFab>> <a class="code" href="classERF.html#afbdb6ebd90d8f8a2af148d66c1f81be9">rad_fluxes</a>; <span class="comment">// radiation fluxes (SW up/dn, LW up/dn) (OUTPUT ONLY)</span></div>
<div class="line"><a name="l00888"></a><span class="lineno"> 888</span> <span class="preprocessor">#ifdef ERF_USE_SHOC</span></div>
<div class="line"><a name="l00889"></a><span class="lineno"> 889</span>  amrex::Vector<std::unique_ptr<SHOCInterface>> shoc_interface; <span class="comment">// SHOC model at each level</span></div>
<div class="line"><a name="l00890"></a><span class="lineno"> 890</span> <span class="preprocessor">#endif</span></div>
<div class="line"><a name="l00891"></a><span class="lineno"> 891</span>  </div>
<div class="line"><a name="l00892"></a><span class="lineno"> 892</span> <span class="preprocessor">#ifdef ERF_USE_P3</span></div>
<div class="line"><a name="l00893"></a><span class="lineno"> 893</span>  amrex::Vector<std::unique_ptr<P3Interface>> p3_interface; <span class="comment">// P3 model at each level</span></div>
<div class="line"><a name="l00894"></a><span class="lineno"> 894</span> <span class="preprocessor">#endif</span></div>
<div class="line"><a name="l00895"></a><span class="lineno"> 895</span>  </div>
<div class="line"><a name="l00896"></a><span class="lineno"><a class="line" href="classERF.html#a34f2eb136e6747a7e6461fb95e50076e"> 896</a></span>  <span class="keywordtype">bool</span> <a class="code" href="classERF.html#a34f2eb136e6747a7e6461fb95e50076e">plot_rad</a> = <span class="keyword">false</span>;</div>
<div class="line"><a name="l00897"></a><span class="lineno"><a class="line" href="classERF.html#a9194db6f65f3cfa366010648eaa4affd"> 897</a></span>  <span class="keywordtype">int</span> <a class="code" href="classERF.html#a9194db6f65f3cfa366010648eaa4affd">rad_datalog_int</a> = -1;</div>
<div class="line"><a name="l00898"></a><span class="lineno"> 898</span>  </div>
<div class="line"><a name="l00899"></a><span class="lineno"> 899</span>  <span class="comment">// Fillpatcher classes for coarse-fine boundaries</span></div>
<div class="line"><a name="l00900"></a><span class="lineno"><a class="line" href="classERF.html#ad9084179f7384e10a519989ffd51fd34"> 900</a></span>  <span class="keywordtype">int</span> <a class="code" href="classERF.html#ad9084179f7384e10a519989ffd51fd34">cf_width</a>{0};</div>
<div class="line"><a name="l00901"></a><span class="lineno"><a class="line" href="classERF.html#a1e3e2855b6e811596226c167573ad62d"> 901</a></span>  <span class="keywordtype">int</span> <a class="code" href="classERF.html#a1e3e2855b6e811596226c167573ad62d">cf_set_width</a>{0};</div>
<div class="line"><a name="l00902"></a><span class="lineno"><a class="line" href="classERF.html#a34160ca20fb400ee285664117cb80512"> 902</a></span>  amrex::Vector<ERFFillPatcher> <a class="code" href="classERF.html#a34160ca20fb400ee285664117cb80512">FPr_c</a>;</div>
<div class="line"><a name="l00903"></a><span class="lineno"><a class="line" href="classERF.html#a0ef3455d5b4fc9a178e023b233d389a4"> 903</a></span>  amrex::Vector<ERFFillPatcher> <a class="code" href="classERF.html#a0ef3455d5b4fc9a178e023b233d389a4">FPr_u</a>;</div>
<div class="line"><a name="l00904"></a><span class="lineno"><a class="line" href="classERF.html#a1dc7086aec533a042e6033706845b0c3"> 904</a></span>  amrex::Vector<ERFFillPatcher> <a class="code" href="classERF.html#a1dc7086aec533a042e6033706845b0c3">FPr_v</a>;</div>
<div class="line"><a name="l00905"></a><span class="lineno"><a class="line" href="classERF.html#ac9a11403c2238d0d1e7b65b2d100dbaf"> 905</a></span>  amrex::Vector<ERFFillPatcher> <a class="code" href="classERF.html#ac9a11403c2238d0d1e7b65b2d100dbaf">FPr_w</a>;</div>
<div class="line"><a name="l00906"></a><span class="lineno"> 906</span>  </div>
<div class="line"><a name="l00907"></a><span class="lineno"> 907</span>  <span class="comment">// Diffusive stresses and Smag</span></div>
<div class="line"><a name="l00908"></a><span class="lineno"><a class="line" href="classERF.html#a3d4a3ed54fb357c02e6494461f182aa1"> 908</a></span>  amrex::Vector<amrex::Vector<std::unique_ptr<amrex::MultiFab>>> <a class="code" href="classERF.html#a3d4a3ed54fb357c02e6494461f182aa1">Tau</a>;</div>
<div class="line"><a name="l00909"></a><span class="lineno"><a class="line" href="classERF.html#aaba487ac7d557757c39c710c4f13f03b"> 909</a></span>  amrex::Vector<amrex::Vector<std::unique_ptr<amrex::MultiFab>>> <a class="code" href="classERF.html#aaba487ac7d557757c39c710c4f13f03b">Tau_corr</a>; <span class="comment">// correction to tau for implicit</span></div>
<div class="line"><a name="l00910"></a><span class="lineno"><a class="line" href="classERF.html#a327d704704abd516be19339cb2d226f9"> 910</a></span>  amrex::Vector<std::unique_ptr<amrex::MultiFab>> <a class="code" href="classERF.html#a327d704704abd516be19339cb2d226f9">eddyDiffs_lev</a>;</div>
<div class="line"><a name="l00911"></a><span class="lineno"><a class="line" href="classERF.html#a9faaa96a7c270d2b2b062d9f30f19711"> 911</a></span>  amrex::Vector<std::unique_ptr<amrex::MultiFab>> <a class="code" href="classERF.html#a9faaa96a7c270d2b2b062d9f30f19711">SmnSmn_lev</a>;</div>
<div class="line"><a name="l00912"></a><span class="lineno"> 912</span>  </div>