From ff52ab36fe82b95392bac8b9929fc5e462377d14 Mon Sep 17 00:00:00 2001 From: Eirik Rolland Enger Date: Sun, 18 Dec 2022 14:55:26 +0100 Subject: [PATCH 1/3] feat(spectrum calc): option to include different ions An attempt at opening for including different ion species. --- assets/examples.py | 36 ++- poetry.lock | 457 ++++++++++++++--------------- src/inscar/spectrum_calculation.py | 32 +- 3 files changed, 278 insertions(+), 247 deletions(-) diff --git a/assets/examples.py b/assets/examples.py index 78931c9d..8a3a6e06 100644 --- a/assets/examples.py +++ b/assets/examples.py @@ -157,7 +157,7 @@ def _plasma_line(): def _gyro_line(): e = isr.Particle(temperature=200, kappa=8, number_density=2e10) - m_i = 16 * (const.m_p + const.m_n) / 2 + m_i = 18 * (const.m_p + const.m_n) / 2 i = isr.Particle( gordeyev_upper_lim=1.5e-2, temperature=200, @@ -184,6 +184,39 @@ def _gyro_line(): plt.semilogy(x, y) +def _gyro_line_two_species(): + e = isr.Particle(temperature=200, kappa=8, number_density=2e10) + i1 = isr.Particle( + gordeyev_upper_lim=1.5e-2, + temperature=200, + mass=16 * (const.m_p + const.m_n) / 2, + ) + i2 = isr.Particle( + gordeyev_upper_lim=1.5e-2, + temperature=200, + mass=1 * (const.m_p + const.m_n) / 2, + ) + params = isr.Parameters( + frequency_range=(-2e6, 2e6), + frequency_size=int(1e4 + 1), + radar_frequency=430e6, + magnetic_field_strength=3.5e-5, + aspect_angle=(360 + 135), + ) + + sim = isr.SpectrumCalculation() + sim.set_params(params) + sim.set_ion(i1, i2) + sim.set_electron(e) + sim.set_ion_integration_function(isr.IntMaxwell()) + sim.set_electron_integration_function(isr.IntMaxwell()) + x, y = sim.calculate_spectrum() + + plt.figure() + plt.title("Gyro-line") + plt.semilogy(x, y) + + def _real_data_custom_vdf(): e = RealDataParticle( temperature=200, kappa=8, velocity_size=10001, gordeyev_size=10001 @@ -225,5 +258,6 @@ def _real_data_custom_vdf(): _ion_line_long() _plasma_line() _gyro_line() + _gyro_line_two_species() _real_data_custom_vdf() plt.show() diff --git a/poetry.lock b/poetry.lock index 7ca9eadc..8f797da8 100644 --- a/poetry.lock +++ b/poetry.lock @@ -50,14 +50,14 @@ tests-no-zope = ["cloudpickle", "coverage[toml] (>=5.0.2)", "hypothesis", "mypy [[package]] name = "babel" -version = "2.10.1" +version = "2.11.0" description = "Internationalization utilities" category = "dev" optional = false python-versions = ">=3.6" files = [ - 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a/src/inscar/spectrum_calculation.py +++ b/src/inscar/spectrum_calculation.py @@ -13,7 +13,7 @@ class SpectrumCalculation: def __init__(self): """Create the basic spectrum calculation object with empty attributes.""" - self.ion: config.Particle + self.ion: tuple[config.Particle | tuple[config.Particle], ...] self.electron: config.Particle self.ion_integration_function: integrand_functions.Integrand self.electron_integration_function: integrand_functions.Integrand @@ -31,13 +31,14 @@ def set_params(self, params: config.Parameters) -> None: """ self.params = params - def set_ion(self, ion: config.Particle) -> None: + def set_ion(self, *ion: config.Particle | tuple[config.Particle]) -> None: """Set the ion particles to use. Parameters ---------- ion: Particle - An instance of the ``Particle`` class, representing ions. + An instance of the ``Particle`` class, representing ions. Any number of ions + can be given. """ self.ion = ion @@ -88,6 +89,8 @@ def calculate_spectrum(self) -> Tuple[np.ndarray, np.ndarray]: ------ ValueError If any of the needed attribute objects are not set. + TypeError + If the provided ions are not a Particle or a tuple of Particle objects. """ if not hasattr(self, "params"): raise ValueError("No parameters set. Use set_params().") @@ -105,10 +108,27 @@ def calculate_spectrum(self) -> Tuple[np.ndarray, np.ndarray]: + "Use set_electron_integration_function()." ) - fi = self._calulate_f(self.ion, self.ion_integration_function) - fe = self._calulate_f(self.electron, self.electron_integration_function) + if isinstance(self.ion, config.Particle): + fi = self._calulate_f(self.ion, self.ion_integration_function) + xp_i = self._susceptibility(self.ion, self.ion_integration_function) + elif isinstance(self.ion, tuple): + fi = sum( + self._calulate_f(fi_, self.ion_integration_function) + for fi_ in self.ion + if isinstance(fi_, config.Particle) + ) + xp_i = sum( + self._susceptibility(xp_i_, self.ion_integration_function) + for xp_i_ in self.ion + if isinstance(xp_i_, config.Particle) + ) + else: + raise TypeError( + "The ions must be a Particle or a list of Particles, " + + f"but was {type(self.ion)}" + ) - xp_i = self._susceptibility(self.ion, self.ion_integration_function) + fe = self._calulate_f(self.electron, self.electron_integration_function) xp_e = self._susceptibility(self.electron, self.electron_integration_function) with np.errstate(divide="ignore", invalid="ignore"): From c32ddd59b053806ae34a0b2e03507c38870bdeb7 Mon Sep 17 00:00:00 2001 From: Eirik Rolland Enger Date: Sun, 18 Dec 2022 15:22:24 +0100 Subject: [PATCH 2/3] style(type): fix type for python3.8 compatibility --- src/inscar/spectrum_calculation.py | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/src/inscar/spectrum_calculation.py b/src/inscar/spectrum_calculation.py index 67b57b39..93e9a42e 100644 --- a/src/inscar/spectrum_calculation.py +++ b/src/inscar/spectrum_calculation.py @@ -1,6 +1,6 @@ """Calculate the power density spectrum and other plasma parameters.""" -from typing import Callable, Optional, Tuple +from typing import Callable, Optional, Tuple, Union import numpy as np import scipy.constants as const @@ -13,7 +13,7 @@ class SpectrumCalculation: def __init__(self): """Create the basic spectrum calculation object with empty attributes.""" - self.ion: tuple[config.Particle | tuple[config.Particle], ...] + self.ion: tuple[Union[config.Particle, tuple[config.Particle]], ...] self.electron: config.Particle self.ion_integration_function: integrand_functions.Integrand self.electron_integration_function: integrand_functions.Integrand @@ -31,7 +31,7 @@ def set_params(self, params: config.Parameters) -> None: """ self.params = params - def set_ion(self, *ion: config.Particle | tuple[config.Particle]) -> None: + def set_ion(self, *ion: Union[config.Particle, tuple[config.Particle]]) -> None: """Set the ion particles to use. Parameters From 63944a7418dccaf0f38931b9f6ce5b61afd69e10 Mon Sep 17 00:00:00 2001 From: Eirik Rolland Enger Date: Mon, 19 Dec 2022 13:40:37 +0100 Subject: [PATCH 3/3] fix(type): Use typing.Tuple not tuple The tuple type is not valid python3.8. --- src/inscar/spectrum_calculation.py | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/src/inscar/spectrum_calculation.py b/src/inscar/spectrum_calculation.py index 93e9a42e..024f77d3 100644 --- a/src/inscar/spectrum_calculation.py +++ b/src/inscar/spectrum_calculation.py @@ -13,7 +13,7 @@ class SpectrumCalculation: def __init__(self): """Create the basic spectrum calculation object with empty attributes.""" - self.ion: tuple[Union[config.Particle, tuple[config.Particle]], ...] + self.ion: Tuple[Union[config.Particle, Tuple[config.Particle]], ...] self.electron: config.Particle self.ion_integration_function: integrand_functions.Integrand self.electron_integration_function: integrand_functions.Integrand @@ -31,12 +31,12 @@ def set_params(self, params: config.Parameters) -> None: """ self.params = params - def set_ion(self, *ion: Union[config.Particle, tuple[config.Particle]]) -> None: + def set_ion(self, *ion: Union[config.Particle, Tuple[config.Particle]]) -> None: """Set the ion particles to use. Parameters ---------- - ion: Particle + ion: Union[config.Particle, Tuple[config.Particle]] An instance of the ``Particle`` class, representing ions. Any number of ions can be given. """