diff --git a/runtime/fundamentals/modules.md b/runtime/fundamentals/modules.md
index 46e081875..6d4d4e4b3 100644
--- a/runtime/fundamentals/modules.md
+++ b/runtime/fundamentals/modules.md
@@ -161,12 +161,11 @@ during tests.
 
 When working with third-party modules in Deno, use the same `import` syntax as
 you do for local code. Third party modules are typically imported from a remote
-registry and start with `jsr:` , `npm:` or `https://`.
+registry and start with `jsr:` or `npm:`.
 
 ```ts title="main.ts"
 import { camelCase } from "jsr:@luca/cases@1.0.0";
 import { say } from "npm:cowsay@1.6.0";
-import { pascalCase } from "https://deno.land/x/case/mod.ts";
 ```
 
 Deno recommends [JSR](https://jsr.io), the modern JavaScript registry, for third
@@ -189,8 +188,7 @@ field the **import map**, which is based on the [Import Maps Standard].
 {
   "imports": {
     "@luca/cases": "jsr:@luca/cases@^1.0.0",
-    "cowsay": "npm:cowsay@^1.6.0",
-    "cases": "https://deno.land/x/case/mod.ts"
+    "cowsay": "npm:cowsay@^1.6.0"
   }
 }
 ```
@@ -200,7 +198,6 @@ With remapped specifiers, the code looks cleaner:
 ```ts title="main.ts"
 import { camelCase } from "@luca/cases";
 import { say } from "cowsay";
-import { pascalCase } from "cases";
 ```
 
 The remapped name can be any valid specifier. It's a very powerful feature in
@@ -320,44 +317,23 @@ Here is an overview of all the ways you can specify a version or a range:
 
 ## HTTPS imports
 
-Deno also supports import statements that reference HTTP/HTTPS URLs, either
-directly:
+Deno supports import statements that reference HTTP/HTTPS URLs:
 
 ```js
 import { Application } from "https://deno.land/x/oak/mod.ts";
 ```
 
-or part of your `deno.json` import map:
+This can be convenient for small, single-file scripts that don't need a
+`deno.json` file. However, for most projects **we recommend using `jsr:` or
+`npm:` specifiers instead**, which provide better versioning, dependency
+management, and tooling support (including `deno add` and `deno install`).
 
-```json
-{
-  "imports": {
-    "oak": "https://deno.land/x/oak/mod.ts"
-  }
-}
-```
-
-Supporting HTTPS imports enables us to support the following JavaScript CDNs, as
-they provide URL access to JavaScript modules:
+:::caution
 
-- [deno.land/x](https://deno.land/x)
-- [esm.sh](https://esm.sh)
-- [unpkg.com](https://unpkg.com)
-
-HTTPS imports are useful if you have a small, often single file, Deno project
-that doesn't require any other configuration. With HTTPS imports, you can avoid
-having a `deno.json` file at all. It is **not** advised to use this style of
-import in larger applications however, as you may end up with version conflicts
-(where different files use different version specifiers). HTTP imports are not
-supported by `deno add`/`deno install` commands.
-
-:::info
-
-Use HTTPS imports with caution, and only **from trusted sources**. If the server
-is compromised, it could serve malicious code to your application. They can also
-cause versioning issues if you import different versions in different files.
-HTTPS imports remain supported, **but we recommend using a package registry for
-the best experience.**
+HTTPS imports do not support version resolution, are not managed by
+`deno add`/`deno install`, and can cause versioning issues if different files
+reference different URLs. Only use them from **trusted sources** — if the server
+is compromised, it could serve malicious code to your application.
 
 :::
 
@@ -433,36 +409,6 @@ Limitations:
 - The npm package name must exist in the registry, even if you're using a local
   copy.
 
-### Overriding HTTPS imports
-
-Deno also allows overriding HTTPS imports through the `scopes` field in
-`deno.json`. This feature is particularly useful when substituting a remote
-dependency with a local patched version for debugging or temporary fixes.
-
-Example:
-
-```json title="deno.json"
-{
-  "imports": {
-    "example/": "https://deno.land/x/example/"
-  },
-  "scopes": {
-    "https://deno.land/x/example/": {
-      "https://deno.land/x/my-library@1.0.0/mod.ts": "./patched/mod.ts"
-    }
-  }
-}
-```
-
-Key points:
-
-- The `scopes` field in the import map allows you to redirect specific imports
-  to alternative paths.
-- This is commonly used to override remote dependencies with local files for
-  testing or development purposes.
-- Scopes apply only to the root of your project. Nested scopes within
-  dependencies are ignored.
-
 ## Vendoring remote modules
 
 If your project has external dependencies, you may want to store them locally to
@@ -509,8 +455,6 @@ Modules can be published to:
   auto-generates documentation for you
 - [npm](https://www.npmjs.com/) - use [dnt](https://github.com/denoland/dnt) to
   create the npm package
-- [deno.land/x](https://deno.com/add_module) - for HTTPS imports, use JSR
-  instead if possible
 
 ## Reloading modules
 
@@ -711,8 +655,8 @@ following in a Deno configuration file:
 
 ## Supply chain management
 
-Modern JavaScript projects pull code from many sources (JSR, npm, HTTPS URLs,
-local workspaces). Good supply chain management helps you achieve four goals:
+Modern JavaScript projects pull code from many sources (JSR, npm, local
+workspaces). Good supply chain management helps you achieve four goals:
 
 - Determinism: everyone (and your CI) runs the exact same code.
 - Security: unexpected upstream changes or compromises are detected early.
@@ -734,8 +678,8 @@ local workspaces). Good supply chain management helps you achieve four goals:
 4. Vendor when you need hermetic/offline builds (`"vendor": true`) or when you
    must patch third‑party code locally. Vendoring does not remove the need for a
    lockfile—it complements it.
-5. Prefer import map (`imports`) entries over raw HTTPS imports in larger
-   codebases to centralize version changes.
+5. Use `jsr:` and `npm:` specifiers with import map (`imports`) entries to
+   centralize version management.
 6. Periodically unfreeze and update consciously (for example on a weekly or
    sprint cadence) instead of ad‑hoc updates during feature work.
 
diff --git a/runtime/getting_started/command_line_interface.md b/runtime/getting_started/command_line_interface.md
index bd980e290..5d6e73d3a 100644
--- a/runtime/getting_started/command_line_interface.md
+++ b/runtime/getting_started/command_line_interface.md
@@ -36,13 +36,6 @@ relative to the current working directory:
 deno run main.ts
 ```
 
-Deno supports running scripts directly from URLs. This is particularly useful
-for quickly testing or running code without downloading it first:
-
-```shell
-deno run https://docs.deno.com/examples/scripts/hello_world.ts
-```
-
 You can also run a script by piping it through standard input. This is useful
 for integrating with other command-line tools or dynamically generating scripts:
 
diff --git a/runtime/reference/cli/run.md b/runtime/reference/cli/run.md
index 6ea0a7bbe..2a89a0033 100644
--- a/runtime/reference/cli/run.md
+++ b/runtime/reference/cli/run.md
@@ -4,19 +4,12 @@ oldUrl: /runtime/manual/tools/run/
 command: run
 openGraphLayout: "/open_graph/cli-commands.jsx"
 openGraphTitle: "deno run"
-description: "Run a JavaScript or TypeScript program from a file or URL with Deno's runtime"
+description: "Run a JavaScript or TypeScript program with Deno's runtime"
 ---
 
 ## Usage
 
-To run [this file](https://docs.deno.com/examples/scripts/hello_world.ts) use:
-
-```console
-deno run https://docs.deno.com/examples/scripts/hello_world.ts
-```
-
-You can also run files locally. Ensure that you are in the correct directory and
-use:
+Run a local file:
 
 ```console
 deno run hello-world.ts
@@ -77,7 +70,7 @@ console if there are errors while you work.
 You can pipe code from stdin and run it immediately with:
 
 ```console
-curl https://docs.deno.com/examples/scripts/hello_world.ts | deno run -
+cat main.ts | deno run -
 ```
 
 ## Terminate run
diff --git a/runtime/reference/jsx.md b/runtime/reference/jsx.md
index 472637fad..987355a3c 100644
--- a/runtime/reference/jsx.md
+++ b/runtime/reference/jsx.md
@@ -194,10 +194,10 @@ using the default "legacy" configuration, you can add the JSX import source
 pragma to a `.jsx` or `.tsx` module, and Deno will respect it.
 
 The `@jsxImportSource` pragma needs to be in the leading comments of the module.
-For example to use Preact from esm.sh, you would do something like this:
+For example to use Preact, you would do something like this:
 
 ```jsx
-/** @jsxImportSource https://esm.sh/preact */
+/** @jsxImportSource preact */
 
 export function App() {
   return (
@@ -208,6 +208,9 @@ export function App() {
 }
 ```
 
+This requires `preact` to be mapped in your `deno.json` import map (e.g.
+`"preact": "npm:preact@^10"`).
+
 ### `jsxImportSourceTypes`
 
 In certain cases, a library may not provide types. To specify the types, you can
diff --git a/runtime/reference/migration_guide.md b/runtime/reference/migration_guide.md
index 57c63073d..6faddc6ff 100644
--- a/runtime/reference/migration_guide.md
+++ b/runtime/reference/migration_guide.md
@@ -149,7 +149,7 @@ import { denoPlugins } from "jsr:@luca/esbuild-deno-loader";
 
 const result = await esbuild.build({
   plugins: [...denoPlugins()],
-  entryPoints: ["https://deno.land/std@0.185.0/bytes/mod.ts"],
+  entryPoints: ["./main.ts"],
   outfile: "./dist/bytes.esm.js",
   bundle: true,
   format: "esm",
diff --git a/runtime/reference/ts_config_migration.md b/runtime/reference/ts_config_migration.md
index bf55e980b..dcce176f8 100644
--- a/runtime/reference/ts_config_migration.md
+++ b/runtime/reference/ts_config_migration.md
@@ -394,7 +394,7 @@ means it requires an extension, and is relative to the module referencing it. It
 can be a fully qualified URL as well:
 
 ```ts
-/// <reference types="https://deno.land/x/pkg@1.0.0/types.d.ts" />
+/// <reference types="./types.d.ts" />
 ```
 
 ### Supplying "types" in deno.json
@@ -407,7 +407,6 @@ your `deno.json`. For example:
   "compilerOptions": {
     "types": [
       "./types.d.ts",
-      "https://deno.land/x/pkg@1.0.0/types.d.ts",
       "/Users/me/pkg/types.d.ts"
     ]
   }
@@ -485,13 +484,10 @@ file, its resolution follow the normal import rules of Deno. For a lot of the
 `.d.ts` files that are generated and available on the web, they may not be
 compatible with Deno.
 
-[esm.sh](https://esm.sh) is a CDN which provides type declarations by default
-(via the `X-TypeScript-Types` header). It can be disabled by appending `?no-dts`
-to the import URL:
-
-```ts
-import React from "https://esm.sh/react?no-dts";
-```
+When using HTTPS imports from CDNs like [esm.sh](https://esm.sh), type
+declarations are provided by default (via the `X-TypeScript-Types` header). This
+can be disabled by appending `?no-dts` to the import URL. Note that for most
+use cases, `npm:` specifiers are the recommended way to import npm packages.
 
 ## Behavior of JavaScript when type checking