diff --git a/migrations/Version20260323085126.php b/migrations/Version20260323085126.php
new file mode 100644
index 0000000..91bdb69
--- /dev/null
+++ b/migrations/Version20260323085126.php
@@ -0,0 +1,64 @@
+<?php
+
+declare(strict_types=1);
+
+namespace DoctrineMigrations;
+
+use Doctrine\DBAL\Schema\Schema;
+use Doctrine\Migrations\AbstractMigration;
+
+final class Version20260323085126 extends AbstractMigration
+{
+    public function getDescription(): string
+    {
+        return 'Add version link indices';
+    }
+
+    public function up(Schema $schema): void
+    {
+        $tables = [
+            'version_conflict_link',
+            'version_dev_require_link',
+            'version_provide_link',
+            'version_replace_link',
+            'version_require_link',
+            'version_suggest_link',
+        ];
+
+        foreach ($tables as $table) {
+            $this->addSql(<<<SQL
+                ALTER TABLE $table ADD index INT DEFAULT NULL
+            SQL);
+            $this->addSql(<<<SQL
+                UPDATE $table t
+                SET "index" = sub.row_num - 1
+                FROM (
+                    SELECT id, ROW_NUMBER() OVER (PARTITION BY version_id ORDER BY id) AS row_num
+                    FROM $table
+                ) sub
+                WHERE t.id = sub.id
+            SQL);
+            $this->addSql(<<<SQL
+                ALTER TABLE $table ALTER COLUMN index SET NOT NULL
+            SQL);
+        }
+    }
+
+    public function down(Schema $schema): void
+    {
+        $tables = [
+            'version_conflict_link',
+            'version_dev_require_link',
+            'version_provide_link',
+            'version_replace_link',
+            'version_require_link',
+            'version_suggest_link',
+        ];
+
+        foreach ($tables as $table) {
+            $this->addSql(<<<SQL
+                ALTER TABLE $table DROP index
+            SQL);
+        }
+    }
+}
diff --git a/src/Doctrine/Entity/AbstractVersionLink.php b/src/Doctrine/Entity/AbstractVersionLink.php
index f5da71b..786c068 100644
--- a/src/Doctrine/Entity/AbstractVersionLink.php
+++ b/src/Doctrine/Entity/AbstractVersionLink.php
@@ -15,6 +15,9 @@ abstract class AbstractVersionLink
 
     protected Version $version;
 
+    #[ORM\Column]
+    private int $index;
+
     #[ORM\Column(length: 191)]
     private string $linkedPackageName;
 
@@ -26,6 +29,16 @@ public function getId(): ?int
         return $this->id;
     }
 
+    public function getIndex(): int
+    {
+        return $this->index;
+    }
+
+    public function setIndex(int $index): void
+    {
+        $this->index = $index;
+    }
+
     public function getVersion(): Version
     {
         return $this->version;
diff --git a/src/Doctrine/Entity/Version.php b/src/Doctrine/Entity/Version.php
index 318f6b3..164a60c 100644
--- a/src/Doctrine/Entity/Version.php
+++ b/src/Doctrine/Entity/Version.php
@@ -56,21 +56,27 @@ class Version extends TrackedEntity implements \Stringable
     private ?array $dist = null;
 
     #[ORM\OneToMany(mappedBy: 'version', targetEntity: VersionRequireLink::class, cascade: ['persist', 'detach', 'remove'])]
+    #[ORM\OrderBy(['index' => 'ASC'])]
     private Collection $require;
 
     #[ORM\OneToMany(mappedBy: 'version', targetEntity: VersionDevRequireLink::class, cascade: ['persist', 'detach', 'remove'])]
+    #[ORM\OrderBy(['index' => 'ASC'])]
     private Collection $devRequire;
 
     #[ORM\OneToMany(mappedBy: 'version', targetEntity: VersionConflictLink::class, cascade: ['persist', 'detach', 'remove'])]
+    #[ORM\OrderBy(['index' => 'ASC'])]
     private Collection $conflict;
 
     #[ORM\OneToMany(mappedBy: 'version', targetEntity: VersionProvideLink::class, cascade: ['persist', 'detach', 'remove'])]
+    #[ORM\OrderBy(['index' => 'ASC'])]
     private Collection $provide;
 
     #[ORM\OneToMany(mappedBy: 'version', targetEntity: VersionReplaceLink::class, cascade: ['persist', 'detach', 'remove'])]
+    #[ORM\OrderBy(['index' => 'ASC'])]
     private Collection $replace;
 
     #[ORM\OneToMany(mappedBy: 'version', targetEntity: VersionSuggestLink::class, cascade: ['persist', 'detach', 'remove'])]
+    #[ORM\OrderBy(['index' => 'ASC'])]
     private Collection $suggest;
 
     #[ORM\ManyToMany(targetEntity: Keyword::class, inversedBy: 'versions', cascade: ['persist', 'detach', 'remove'])]
diff --git a/src/Package/PackageMetadataResolver.php b/src/Package/PackageMetadataResolver.php
index 7ad02e9..0490dad 100644
--- a/src/Package/PackageMetadataResolver.php
+++ b/src/Package/PackageMetadataResolver.php
@@ -317,6 +317,7 @@ private function updateVersion(Package $package, Version $version, CompletePacka
         // handle links
         foreach (self::SUPPORTED_LINK_TYPES as $linkType => $opts) {
             $links = [];
+            $linkIndex = 0;
             foreach ($data->{$opts['method']}() as $link) {
                 $constraint = $link->getPrettyConstraint();
                 if (str_contains($constraint, ',') && str_contains($constraint, '@')) {
@@ -329,7 +330,7 @@ private function updateVersion(Package $package, Version $version, CompletePacka
                     }, $constraint);
                 }
 
-                $links[$link->getTarget()] = $constraint;
+                $links[$link->getTarget()] = ['constraint' => $constraint, 'index' => $linkIndex++];
             }
 
             /** @var AbstractVersionLink $link */
@@ -337,20 +338,25 @@ private function updateVersion(Package $package, Version $version, CompletePacka
                 $linkPackageName = $link->getLinkedPackageName();
 
                 // Clear links that have changed/disappeared (for updates)
-                if (!isset($links[$linkPackageName]) || $links[$linkPackageName] !== $link->getLinkedVersionConstraint()) {
+                if (!isset($links[$linkPackageName]) || $links[$linkPackageName]['constraint'] !== $link->getLinkedVersionConstraint()) {
                     $version->{'get' . $linkType}()->removeElement($link);
                     $em->remove($link);
                 } else {
+                    // Update index if it changed
+                    if ($link->getIndex() !== $links[$linkPackageName]['index']) {
+                        $link->setIndex($links[$linkPackageName]['index']);
+                    }
                     // Clear those that are already set
                     unset($links[$linkPackageName]);
                 }
             }
 
-            foreach ($links as $linkPackageName => $linkPackageConstraint) {
+            foreach ($links as $linkPackageName => $linkData) {
                 /** @var AbstractVersionLink $link */
                 $link = new $opts['entity']();
                 $link->setLinkedPackageName($linkPackageName);
-                $link->setLinkedVersionConstraint($linkPackageConstraint);
+                $link->setLinkedVersionConstraint($linkData['constraint']);
+                $link->setIndex($linkData['index']);
                 $version->{'add' . $linkType . 'Link'}($link);
                 $link->setVersion($version);
                 $em->persist($link);
@@ -358,23 +364,34 @@ private function updateVersion(Package $package, Version $version, CompletePacka
         }
 
         // handle suggests
-        if ($suggests = $data->getSuggests()) {
+        if ($suggestsData = $data->getSuggests()) {
+            $suggests = [];
+            $suggestIndex = 0;
+            foreach ($suggestsData as $suggestPackageName => $suggestConstraint) {
+                $suggests[$suggestPackageName] = ['constraint' => $suggestConstraint, 'index' => $suggestIndex++];
+            }
+
             foreach ($version->getSuggest() as $link) {
                 $linkPackageName = $link->getLinkedPackageName();
                 // clear links that have changed/disappeared (for updates)
-                if (!isset($suggests[$linkPackageName]) || $suggests[$linkPackageName] !== $link->getLinkedVersionConstraint()) {
+                if (!isset($suggests[$linkPackageName]) || $suggests[$linkPackageName]['constraint'] !== $link->getLinkedVersionConstraint()) {
                     $version->getSuggest()->removeElement($link);
                     $em->remove($link);
                 } else {
+                    // Update index if it changed
+                    if ($link->getIndex() !== $suggests[$linkPackageName]['index']) {
+                        $link->setIndex($suggests[$linkPackageName]['index']);
+                    }
                     // clear those that are already set
                     unset($suggests[$linkPackageName]);
                 }
             }
 
-            foreach ($suggests as $linkPackageName => $linkPackageConstraint) {
+            foreach ($suggests as $linkPackageName => $linkData) {
                 $link = new VersionSuggestLink();
                 $link->setLinkedPackageName($linkPackageName);
-                $link->setLinkedVersionConstraint($linkPackageConstraint);
+                $link->setLinkedVersionConstraint($linkData['constraint']);
+                $link->setIndex($linkData['index']);
                 $version->addSuggestLink($link);
                 $link->setVersion($version);
                 $em->persist($link);