env.yml

name: py310
channels:
  - bioconda
  - conda-forge
dependencies:
  - _libgcc_mutex=0.1=conda_forge
  - _openmp_mutex=4.5=4_kmp_llvm
  - absl-py=2.3.1=pyhd8ed1ab_0
  - aiobotocore=2.24.2=pyhcf101f3_0
  - aiohappyeyeballs=2.6.1=pyhd8ed1ab_0
  - aiohttp=3.12.15=py310h3406613_0
  - aioitertools=0.12.0=pyhd8ed1ab_1
  - aiosignal=1.4.0=pyhd8ed1ab_0
  - alsa-lib=1.2.14=hb9d3cd8_0
  - anndata=0.11.4=pyhd8ed1ab_0
  - arpack=3.9.1=nompi_hf03ea27_102
  - array-api-compat=1.12.0=pyhe01879c_0
  - asttokens=3.0.0=pyhd8ed1ab_1
  - async-timeout=5.0.1=pyhd8ed1ab_1
  - attrs=25.3.0=pyh71513ae_0
  - aws-c-auth=0.9.0=h0fbd49f_19
  - aws-c-cal=0.9.2=he7b75e1_1
  - aws-c-common=0.12.4=hb03c661_0
  - aws-c-compression=0.3.1=h92c474e_6
  - aws-c-event-stream=0.5.5=h149bd38_3
  - aws-c-http=0.10.4=h37a7233_0
  - aws-c-io=0.21.2=h6252d9a_1
  - aws-c-mqtt=0.13.3=h19deb91_3
  - aws-c-s3=0.8.6=h800fcd2_2
  - aws-c-sdkutils=0.2.4=h92c474e_1
  - aws-checksums=0.2.7=h92c474e_2
  - aws-crt-cpp=0.33.1=hb4fd278_2
  - aws-sdk-cpp=1.11.606=h31ade35_1
  - azure-core-cpp=1.16.0=h3a458e0_0
  - azure-identity-cpp=1.12.0=ha729027_0
  - azure-storage-blobs-cpp=12.14.0=hb1c9500_1
  - azure-storage-common-cpp=12.10.0=hebae86a_2
  - azure-storage-files-datalake-cpp=12.12.0=h8b27e44_3
  - beautifulsoup4=4.13.5=pyha770c72_0
  - botocore=1.40.18=pyhd8ed1ab_0
  - brotli=1.1.0=hb03c661_4
  - brotli-bin=1.1.0=hb03c661_4
  - brotli-python=1.1.0=py310hea6c23e_4
  - bzip2=1.0.8=hda65f42_8
  - c-ares=1.34.5=hb9d3cd8_0
  - ca-certificates=2025.8.3=hbd8a1cb_0
  - cached-property=1.5.2=hd8ed1ab_1
  - cached_property=1.5.2=pyha770c72_1
  - cairo=1.18.4=h3394656_0
  - capnproto=1.2.0=hfc315d8_0
  - celltypist=1.7.1=pyhdfd78af_0
  - cellxgene-census=1.17.0=pyh29332c3_0
  - certifi=2025.8.3=pyhd8ed1ab_0
  - cffi=1.17.1=py310h34a4b09_1
  - charset-normalizer=3.4.3=pyhd8ed1ab_0
  - click=8.2.1=pyh707e725_0
  - colorama=0.4.6=pyhd8ed1ab_1
  - comm=0.2.3=pyhe01879c_0
  - contourpy=1.3.2=py310h3788b33_0
  - cpython=3.10.18=py310hd8ed1ab_0
  - cycler=0.12.1=pyhd8ed1ab_1
  - cyrus-sasl=2.1.28=hd9c7081_0
  - dbus=1.16.2=h3c4dab8_0
  - debugpy=1.8.16=py310h25320af_1
  - decorator=5.2.1=pyhd8ed1ab_0
  - docrep=0.3.2=pyh44b312d_0
  - double-conversion=3.3.1=h5888daf_0
  - et_xmlfile=2.0.0=pyhd8ed1ab_1
  - exceptiongroup=1.3.0=pyhd8ed1ab_0
  - executing=2.2.1=pyhd8ed1ab_0
  - fastcluster=1.3.0=np2py310h3d4ba91_1
  - filelock=3.19.1=pyhd8ed1ab_0
  - fmt=11.2.0=h07f6e7f_0
  - font-ttf-dejavu-sans-mono=2.37=hab24e00_0
  - font-ttf-inconsolata=3.000=h77eed37_0
  - font-ttf-source-code-pro=2.038=h77eed37_0
  - font-ttf-ubuntu=0.83=h77eed37_3
  - fontconfig=2.15.0=h7e30c49_1
  - fonts-conda-ecosystem=1=0
  - fonts-conda-forge=1=0
  - fonttools=4.59.2=py310h3406613_0
  - freetype=2.14.1=ha770c72_0
  - frozenlist=1.7.0=py310h9548a50_0
  - fsspec=2025.9.0=pyhd8ed1ab_0
  - future=1.0.0=pyhd8ed1ab_2
  - gdown=5.2.0=pyhd8ed1ab_1
  - geos=3.13.1=h97f6797_0
  - gflags=2.2.2=h5888daf_1005
  - glog=0.7.1=hbabe93e_0
  - glpk=5.0=h445213a_0
  - gmp=6.3.0=hac33072_2
  - gmpy2=2.2.1=py310h63ebcad_1
  - graphite2=1.3.14=hecca717_2
  - grpcio=1.73.1=py310h56556e8_0
  - h2=4.3.0=pyhcf101f3_0
  - h5py=3.14.0=nompi_py310h4aa865e_101
  - harfbuzz=11.4.5=h15599e2_0
  - hdf5=1.14.6=nompi_h6e4c0c1_103
  - hpack=4.1.0=pyhd8ed1ab_0
  - hyperframe=6.1.0=pyhd8ed1ab_0
  - icu=75.1=he02047a_0
  - idna=3.10=pyhd8ed1ab_1
  - igraph=0.10.16=h98b0679_0
  - importlib-metadata=8.7.0=pyhe01879c_1
  - ipykernel=6.30.1=pyh82676e8_0
  - ipython=8.37.0=pyh8f84b5b_0
  - ipywidgets=8.1.7=pyhd8ed1ab_0
  - jedi=0.19.2=pyhd8ed1ab_1
  - jinja2=3.1.6=pyhd8ed1ab_0
  - jmespath=1.0.1=pyhd8ed1ab_1
  - joblib=1.5.2=pyhd8ed1ab_0
  - jupyter_client=8.6.3=pyhd8ed1ab_1
  - jupyter_core=5.8.1=pyh31011fe_0
  - jupyterlab_widgets=3.0.15=pyhd8ed1ab_0
  - keyutils=1.6.3=hb9d3cd8_0
  - kiwisolver=1.4.9=py310haaf941d_1
  - krb5=1.21.3=h659f571_0
  - lcms2=2.17=h717163a_0
  - ld_impl_linux-64=2.44=h1423503_1
  - legacy-api-wrap=1.4.1=pyhd8ed1ab_0
  - leidenalg=0.10.2=py310hea6c23e_1
  - lerc=4.0.0=h0aef613_1
  - libabseil=20250512.1=cxx17_hba17884_0
  - libaec=1.1.4=h3f801dc_0
  - libarrow=21.0.0=hb708d0b_3_cpu
  - libarrow-acero=21.0.0=h635bf11_3_cpu
  - libarrow-compute=21.0.0=h8c2c5c3_3_cpu
  - libarrow-dataset=21.0.0=h635bf11_3_cpu
  - libarrow-substrait=21.0.0=h3f74fd7_3_cpu
  - libblas=3.9.0=35_h4a7cf45_openblas
  - libbrotlicommon=1.1.0=hb03c661_4
  - libbrotlidec=1.1.0=hb03c661_4
  - libbrotlienc=1.1.0=hb03c661_4
  - libcblas=3.9.0=35_h0358290_openblas
  - libclang-cpp20.1=20.1.8=default_h99862b1_1
  - libclang13=21.1.0=default_h746c552_1
  - libcrc32c=1.1.2=h9c3ff4c_0
  - libcups=2.3.3=hb8b1518_5
  - libcurl=8.14.1=h332b0f4_0
  - libdeflate=1.24=h86f0d12_0
  - libdrm=2.4.125=hb03c661_1
  - libedit=3.1.20250104=pl5321h7949ede_0
  - libegl=1.7.0=ha4b6fd6_2
  - libev=4.33=hd590300_2
  - libevent=2.1.12=hf998b51_1
  - libexpat=2.7.1=hecca717_0
  - libffi=3.4.6=h2dba641_1
  - libfreetype=2.14.1=ha770c72_0
  - libfreetype6=2.14.1=h73754d4_0
  - libgcc=15.1.0=h767d61c_5
  - libgcc-ng=15.1.0=h69a702a_5
  - libgfortran=15.1.0=h69a702a_5
  - libgfortran5=15.1.0=hcea5267_5
  - libgl=1.7.0=ha4b6fd6_2
  - libglib=2.84.3=hf39c6af_0
  - libglvnd=1.7.0=ha4b6fd6_2
  - libglx=1.7.0=ha4b6fd6_2
  - libgomp=15.1.0=h767d61c_5
  - libgoogle-cloud=2.39.0=hdb79228_0
  - libgoogle-cloud-storage=2.39.0=hdbdcf42_0
  - libgrpc=1.73.1=h1e535eb_0
  - libhwloc=2.12.1=default_h3d81e11_1000
  - libiconv=1.18=h3b78370_2
  - libjpeg-turbo=3.1.0=hb9d3cd8_0
  - liblapack=3.9.0=35_h47877c9_openblas
  - libleidenalg=0.11.1=h00ab1b0_0
  - libllvm20=20.1.8=hecd9e04_0
  - libllvm21=21.1.0=hecd9e04_0
  - liblzma=5.8.1=hb9d3cd8_2
  - libnghttp2=1.67.0=had1ee68_0
  - libnsl=2.0.1=hb9d3cd8_1
  - libntlm=1.8=hb9d3cd8_0
  - libopenblas=0.3.30=pthreads_h94d23a6_2
  - libopengl=1.7.0=ha4b6fd6_2
  - libopentelemetry-cpp=1.21.0=hb9b0907_1
  - libopentelemetry-cpp-headers=1.21.0=ha770c72_1
  - libparquet=21.0.0=h790f06f_3_cpu
  - libpciaccess=0.18=hb9d3cd8_0
  - libpng=1.6.50=h421ea60_1
  - libpq=17.6=h3675c94_2
  - libprotobuf=6.31.1=h9ef548d_1
  - libre2-11=2025.08.12=h7b12aa8_1
  - libsodium=1.0.20=h4ab18f5_0
  - libsqlite=3.50.4=h0c1763c_0
  - libssh2=1.11.1=hcf80075_0
  - libstdcxx=15.1.0=h8f9b012_5
  - libstdcxx-ng=15.1.0=h4852527_5
  - libthrift=0.22.0=h454ac66_1
  - libtiff=4.7.0=h8261f1e_6
  - libtiledbsoma=1.17.1=h6805eb4_0
  - libtorch=2.7.1=cpu_generic_h1322af4_3
  - libutf8proc=2.11.0=hb04c3b8_0
  - libuuid=2.41.1=he9a06e4_0
  - libuv=1.51.0=hb03c661_1
  - libwebp-base=1.6.0=hd42ef1d_0
  - libxcb=1.17.0=h8a09558_0
  - libxcrypt=4.4.36=hd590300_1
  - libxkbcommon=1.11.0=he8b52b9_0
  - libxml2=2.13.8=h04c0eec_1
  - libxslt=1.1.43=h7a3aeb2_0
  - libzlib=1.3.1=hb9d3cd8_2
  - lightning-utilities=0.15.2=pyhd8ed1ab_0
  - llvm-openmp=21.1.0=h4922eb0_0
  - llvmlite=0.44.0=py310h0070a79_2
  - lz4-c=1.10.0=h5888daf_1
  - markdown=3.9=pyhd8ed1ab_0
  - markdown-it-py=4.0.0=pyhd8ed1ab_0
  - markupsafe=3.0.2=py310h89163eb_1
  - matplotlib=3.10.6=py310hff52083_1
  - matplotlib-base=3.10.6=py310hfde16b3_1
  - matplotlib-inline=0.1.7=pyhd8ed1ab_1
  - mdurl=0.1.2=pyhd8ed1ab_1
  - more-itertools=10.8.0=pyhd8ed1ab_0
  - mpc=1.3.1=h24ddda3_1
  - mpfr=4.2.1=h90cbb55_3
  - mpmath=1.3.0=pyhd8ed1ab_1
  - mudata=0.3.1=pyhd8ed1ab_1
  - multidict=6.6.3=py310h89163eb_0
  - munkres=1.1.4=pyhd8ed1ab_1
  - muon=0.1.6=pyhd8ed1ab_0
  - natsort=8.4.0=pyh29332c3_1
  - ncurses=6.5=h2d0b736_3
  - nest-asyncio=1.6.0=pyhd8ed1ab_1
  - networkx=3.4=pyhd8ed1ab_0
  - nlohmann_json=3.12.0=h3f2d84a_0
  - nomkl=1.0=h5ca1d4c_0
  - numba=0.61.2=py310h8648a56_1
  - numpy=1.26.4=py310hb13e2d6_0
  - openjpeg=2.5.3=h55fea9a_1
  - openldap=2.6.10=he970967_0
  - openpyxl=3.1.5=py310h05b0c27_2
  - openssl=3.5.2=h26f9b46_0
  - opt_einsum=3.4.0=pyhd8ed1ab_1
  - optree=0.17.0=py310h03d9f68_1
  - orc=2.2.0=h1bc01a4_0
  - packaging=25.0=pyh29332c3_1
  - pandas=1.5.3=py310h9b08913_1
  - parso=0.8.5=pyhcf101f3_0
  - patsy=1.0.1=pyhd8ed1ab_1
  - pcre2=10.45=hc749103_0
  - pexpect=4.9.0=pyhd8ed1ab_1
  - pickleshare=0.7.5=pyhd8ed1ab_1004
  - pillow=11.3.0=py310hb7da693_1
  - pip=25.2=pyh8b19718_0
  - pixman=0.46.4=h54a6638_1
  - platformdirs=4.4.0=pyhcf101f3_0
  - prometheus-cpp=1.3.0=ha5d0236_0
  - prompt-toolkit=3.0.52=pyha770c72_0
  - propcache=0.3.1=py310h89163eb_0
  - protobuf=6.31.1=py310h565c32f_0
  - psutil=7.0.0=py310h7c4b9e2_1
  - pthread-stubs=0.4=hb9d3cd8_1002
  - ptyprocess=0.7.0=pyhd8ed1ab_1
  - pure_eval=0.2.3=pyhd8ed1ab_1
  - pyarrow=21.0.0=py310hff52083_0
  - pyarrow-core=21.0.0=py310h923f568_0_cpu
  - pyarrow-hotfix=0.7=pyhd8ed1ab_0
  - pybind11=3.0.1=pyh7a1b43c_0
  - pybind11-global=3.0.1=pyhc7ab6ef_0
  - pycparser=2.22=pyh29332c3_1
  - pydeprecate=0.3.0=pyhd8ed1ab_0
  - pygments=2.19.2=pyhd8ed1ab_0
  - pynndescent=0.5.13=pyhd8ed1ab_1
  - pyparsing=3.2.4=pyhcf101f3_0
  - pyro-api=0.1.2=pyhd8ed1ab_0
  - pyro-ppl=1.9.1=pyhd8ed1ab_1
  - pyside6=6.9.2=py310hc4e1109_1
  - pysocks=1.7.1=pyha55dd90_7
  - python=3.10.18=hd6af730_0_cpython
  - python-annoy=1.17.3=py310hea6c23e_3
  - python-dateutil=2.9.0.post0=pyhe01879c_2
  - python-igraph=0.11.9=py310hc7d1f0d_1
  - python-newick=1.0.0=py_0
  - python-tzdata=2025.2=pyhd8ed1ab_0
  - python_abi=3.10=8_cp310
  - pytorch=2.7.1=cpu_generic_py310_hceade7c_3
  - pytorch-lightning=1.3.8=pyhd8ed1ab_0
  - pytz=2025.2=pyhd8ed1ab_0
  - pyyaml=5.4.1=py310h5764c6d_4
  - pyzmq=27.1.0=py310h4f33d48_0
  - qhull=2020.2=h434a139_5
  - qt6-main=6.9.2=h3fc9a0a_0
  - re2=2025.08.12=h5301d42_1
  - readline=8.2=h8c095d6_2
  - requests=2.32.5=pyhd8ed1ab_0
  - rich=14.1.0=pyhe01879c_0
  - s2n=1.5.23=h8e187f5_0
  - s3fs=2025.9.0=pyhd8ed1ab_0
  - scanpy=1.11.4=pyhd8ed1ab_0
  - scarches=0.6.1=pyh7e72e81_0
  - schpl=1.0.5=pyhdfd78af_0
  - scikit-learn=1.7.2=py310h228f341_0
  - scipy=1.15.2=py310h1d65ade_0
  - scvi-tools=0.14.5=pyhdfd78af_0
  - seaborn=0.13.2=hd8ed1ab_3
  - seaborn-base=0.13.2=pyhd8ed1ab_3
  - session-info2=0.2.2=pyhd8ed1ab_0
  - setuptools=80.9.0=pyhff2d567_0
  - shapely=2.1.1=py310hf4e7fdd_1
  - six=1.17.0=pyhe01879c_1
  - sleef=3.9.0=ha0421bc_0
  - snappy=1.2.2=h03e3b7b_0
  - somacore=1.0.28=pyh29332c3_0
  - soupsieve=2.8=pyhd8ed1ab_0
  - spdlog=1.15.3=h6dc744f_1
  - stack_data=0.6.3=pyhd8ed1ab_1
  - statsmodels=0.14.5=py310haaf2d95_0
  - sympy=1.14.0=pyh2585a3b_105
  - tbb=2022.2.0=hb60516a_1
  - tensorboard=2.20.0=pyhe01879c_0
  - tensorboard-data-server=0.7.0=py310h6c63255_2
  - texttable=1.7.0=pyhd8ed1ab_1
  - threadpoolctl=3.6.0=pyhecae5ae_0
  - tiledb=2.28.1=h5d06175_1
  - tiledb-py=0.34.2=py310hd07e4b6_0
  - tiledbsoma-py=1.17.1=py310h8c1da2a_0
  - tk=8.6.13=noxft_hd72426e_102
  - torchmetrics=1.8.2=pyhd8ed1ab_0
  - tornado=6.5.2=py310h7c4b9e2_1
  - tqdm=4.67.1=pyhd8ed1ab_1
  - traitlets=5.14.3=pyhd8ed1ab_1
  - typing-extensions=4.15.0=h396c80c_0
  - typing_extensions=4.15.0=pyhcf101f3_0
  - tzdata=2025b=h78e105d_0
  - umap-learn=0.5.9.post2=py310hff52083_0
  - unicodedata2=16.0.0=py310h7c4b9e2_1
  - upsetplot=0.9.0=pyhd8ed1ab_1
  - urllib3=2.5.0=pyhd8ed1ab_0
  - wayland=1.24.0=h3e06ad9_0
  - wcwidth=0.2.13=pyhd8ed1ab_1
  - werkzeug=3.1.3=pyhd8ed1ab_1
  - wheel=0.45.1=pyhd8ed1ab_1
  - widgetsnbextension=4.0.14=pyhd8ed1ab_0
  - wrapt=1.17.3=py310h7c4b9e2_1
  - xcb-util=0.4.1=h4f16b4b_2
  - xcb-util-cursor=0.1.5=hb9d3cd8_0
  - xcb-util-image=0.4.0=hb711507_2
  - xcb-util-keysyms=0.4.1=hb711507_0
  - xcb-util-renderutil=0.3.10=hb711507_0
  - xcb-util-wm=0.4.2=hb711507_0
  - xkeyboard-config=2.45=hb9d3cd8_0
  - xorg-libice=1.1.2=hb9d3cd8_0
  - xorg-libsm=1.2.6=he73a12e_0
  - xorg-libx11=1.8.12=h4f16b4b_0
  - xorg-libxau=1.0.12=hb9d3cd8_0
  - xorg-libxcomposite=0.4.6=hb9d3cd8_2
  - xorg-libxcursor=1.2.3=hb9d3cd8_0
  - xorg-libxdamage=1.1.6=hb9d3cd8_0
  - xorg-libxdmcp=1.1.5=hb9d3cd8_0
  - xorg-libxext=1.3.6=hb9d3cd8_0
  - xorg-libxfixes=6.0.1=hb9d3cd8_0
  - xorg-libxi=1.8.2=hb9d3cd8_0
  - xorg-libxrandr=1.5.4=hb9d3cd8_0
  - xorg-libxrender=0.9.12=hb9d3cd8_0
  - xorg-libxtst=1.2.5=hb9d3cd8_3
  - xorg-libxxf86vm=1.1.6=hb9d3cd8_0
  - yaml=0.2.5=h280c20c_3
  - yarl=1.20.1=py310h89163eb_0
  - zeromq=4.3.5=h387f397_9
  - zipp=3.23.0=pyhd8ed1ab_0
  - zlib=1.3.1=hb9d3cd8_2
  - zstandard=0.25.0=py310h139afa4_0
  - zstd=1.5.7=hb8e6e7a_2
prefix: /home/kel/miniforge3/envs/py310