diff --git a/.github/actions/create-issues/action.yml b/.github/actions/create-issues/action.yml index 08b2055..5cee80b 100644 --- a/.github/actions/create-issues/action.yml +++ b/.github/actions/create-issues/action.yml @@ -29,6 +29,8 @@ runs: steps: - name: Checkout code uses: actions/checkout@v4 + with: + clean: false - name: Set up Python uses: actions/setup-python@v5 diff --git a/.github/dependabot.yml b/.github/dependabot.yml index 764048a..dd130fe 100644 --- a/.github/dependabot.yml +++ b/.github/dependabot.yml @@ -17,4 +17,7 @@ updates: directory: "/" schedule: interval: "weekly" - open-pull-requests-limit: 5 \ No newline at end of file + groups: + actions: + patterns: + - "*" \ No newline at end of file diff --git a/.github/workflows/run-bot-analysis.yml b/.github/workflows/run-bot-analysis.yml index d9b11ff..284f7b2 100644 --- a/.github/workflows/run-bot-analysis.yml +++ b/.github/workflows/run-bot-analysis.yml @@ -2,8 +2,8 @@ name: Run Bot Analysis and Issues Generation on ESCAPE-OSSR on: schedule: - # Run every Monday at 00:00 UTC - - cron: '0 0 * * 1' + # Run every first day of the month at 00:00 UTC + - cron: '0 0 1 * *' workflow_dispatch: pull_request: paths: diff --git a/assets/existing_metacheck_analysis/example_pitfall_1.jsonld b/assets/existing_metacheck_analysis/example_pitfall_1.jsonld new file mode 100644 index 0000000..1e55cb3 --- /dev/null +++ b/assets/existing_metacheck_analysis/example_pitfall_1.jsonld @@ -0,0 +1,130 @@ +{ + "@context": "[IN PROCESS]", + "@type": "SoftwareQualityAssessment", + "name": "Quality Assessment for Unknown", + "description": "LOFAR Pipeline System", + "creator": { + "@type": "schema:Person", + "name": "Anonymous", + "email": "example@email.com" + }, + "dateCreated": "2026-03-05T15:57:06Z", + "license": { + "@id": "https://opensource.org/license/mit" + }, + "commit_id": "Unknown", + "assessedSoftware": { + "@type": "schema:SoftwareApplication", + "name": "Unknown", + "softwareVersion": "Before-Remove-TMSS", + "url": "https://git.astron.nl/ro/lofar/", + "commit_id": "Unknown" + }, + "checks": [ + { + "@type": "CheckResult", + "assessesIndicator": { + "@id": "https://w3id.org/example/metacheck/i/indicators/metadatafile" + }, + "checkingSoftware": { + "@type": "schema:SoftwareApplication", + "name": "metacheck", + "@id": "https://w3id.org/example/metacheck/tools/", + "softwareVersion": "0.2.0" + }, + "process": "Compares the version found in the metadata file with the latest repository release tag.", + "status": { + "@id": "schema:CompletedActionStatus" + }, + "pitfall": "https://w3id.org/rsmetacheck/catalog/#P001", + "output": "true", + "evidence": "P001 detected: pom.xml version '2.22.0-SNAPSHOT' does not match release version 'Before-Remove-TMSS'", + "suggestion": "Ensure the version in your metadata matches the latest official release. Keeping these synchronized avoids confusion for users and improves reproducibility.", + "checkId": "8036a85b58a90340eee71682b743c6e47e8455f37d47414278e12121c86c3715" + }, + { + "@type": "CheckResult", + "assessesIndicator": { + "@id": "https://w3id.org/example/metacheck/i/indicators/license" + }, + "checkingSoftware": { + "@type": "schema:SoftwareApplication", + "name": "metacheck", + "@id": "https://w3id.org/example/metacheck/tools/", + "softwareVersion": "0.2.0" + }, + "process": "Searches for common template placeholders (e.g., , ) within the LICENSE file.", + "status": { + "@id": "schema:CompletedActionStatus" + }, + "pitfall": "https://w3id.org/rsmetacheck/catalog/#P002", + "output": "true", + "evidence": "P002 detected: LICENSE file contains unreplaced template placeholders", + "suggestion": "Update the copyright section with accurate names, organizations, and the current year. Personalizing this section ensures clarity and legal accuracy.", + "checkId": "8454f0d79563a0ecd16bd6e439d5a76d282cc8071ca936f496d2c8fa8073ec6f" + }, + { + "@type": "CheckResult", + "assessesIndicator": { + "@id": "https://w3id.org/example/metacheck/i/indicators/metadatafile" + }, + "checkingSoftware": { + "@type": "schema:SoftwareApplication", + "name": "metacheck", + "@id": "https://w3id.org/example/metacheck/tools/", + "softwareVersion": "0.2.0" + }, + "process": "Checks if the codeRepository field points to a project homepage rather than the actual source code repository.", + "status": { + "@id": "schema:CompletedActionStatus" + }, + "pitfall": "https://w3id.org/rsmetacheck/catalog/#P009", + "output": "true", + "evidence": "P009 detected: setup.py codeRepository points to homepage instead of repository: http://www.transientskp.org/", + "suggestion": "You need to update the codeRepository field to point directly to your repository's source code instead of a homepage. Accurate links improve traceability and user access.", + "checkId": "30d666820d2e730be4ba5c7261cb2d893bb81f3c4b20044c517a891d78af0000" + }, + { + "@type": "CheckResult", + "assessesIndicator": { + "@id": "https://w3id.org/example/metacheck/i/indicators/metadatafile" + }, + "checkingSoftware": { + "@type": "schema:SoftwareApplication", + "name": "metacheck", + "@id": "https://w3id.org/example/metacheck/tools/", + "softwareVersion": "0.2.0" + }, + "process": "Analyzes software requirements in metadata to see if they lack explicit version constraints.", + "status": { + "@id": "schema:CompletedActionStatus" + }, + "pitfall": "https://w3id.org/rsmetacheck/catalog/#W001", + "output": "true", + "evidence": "W001 detected: pom.xml contains software requirements without versions: django, psycopg2-binary, djangorestframework, django-polymorphic, django-rest-polymorphic, requests, gunicorn, fabric, invocations, beautifultable, blessings, celery, django-filter, coreapi, matplotlib", + "suggestion": "Add version numbers to your dependencies. This provides stability for users and allows reproducibility across different environments.", + "checkId": "5a28a7a1d78554975164d60957f31f2601eaf60dfa9ebe9b2835e585853f075e" + }, + { + "@type": "CheckResult", + "assessesIndicator": { + "@id": "https://w3id.org/example/metacheck/i/indicators/codemeta" + }, + "checkingSoftware": { + "@type": "schema:SoftwareApplication", + "name": "metacheck", + "@id": "https://w3id.org/example/metacheck/tools/", + "softwareVersion": "0.2.0" + }, + "process": "Detects if multiple distinct licenses are found in the repository but only a single license is declared in codemeta.json.", + "status": { + "@id": "schema:CompletedActionStatus" + }, + "pitfall": "https://w3id.org/rsmetacheck/catalog/#W003", + "output": "true", + "evidence": "W003 detected: Repository has multiple licenses but codemeta.json only lists one. Found in: https:///ro/lofar/-/blob/master/LICENSE", + "suggestion": "Make sure you are using the correct licenses. This avoids confusion about terms of use and ensures full transparency.", + "checkId": "efe9bf2946d3bba4dc5eae8f3f425cfe06a05172953e95284eb8db3c18792811" + } + ] +} \ No newline at end of file diff --git a/assets/existing_metacheck_analysis/example_pitfall_2.jsonld b/assets/existing_metacheck_analysis/example_pitfall_2.jsonld new file mode 100644 index 0000000..173c529 --- /dev/null +++ b/assets/existing_metacheck_analysis/example_pitfall_2.jsonld @@ -0,0 +1,112 @@ +{ + "@context": "[IN PROCESS]", + "@type": "SoftwareQualityAssessment", + "name": "Quality Assessment for Unknown", + "description": "This is a container to extract Gravitational Wave (GW) data from the datalake using Rucio and feed 1 second GW frames to the GW pipelines.", + "creator": { + "@type": "schema:Person", + "name": "Anonymous", + "email": "example@email.com" + }, + "dateCreated": "2026-03-05T15:55:32Z", + "license": { + "@id": "https://opensource.org/license/mit" + }, + "commit_id": "Unknown", + "assessedSoftware": { + "@type": "schema:SoftwareApplication", + "name": "Unknown", + "softwareVersion": "Unknown", + "url": "https://git.ligo.org/rhys.poulton/escape-datalake-shared-volume-writer/", + "schema:identifier": { + "@id": "https://doi.org/10.5281/zenodo.5742053" + }, + "commit_id": "Unknown" + }, + "checks": [ + { + "@type": "CheckResult", + "assessesIndicator": { + "@id": "https://w3id.org/example/metacheck/i/indicators/license" + }, + "checkingSoftware": { + "@type": "schema:SoftwareApplication", + "name": "metacheck", + "@id": "https://w3id.org/example/metacheck/tools/", + "softwareVersion": "0.2.0" + }, + "process": "Searches for common template placeholders (e.g., , ) within the LICENSE file.", + "status": { + "@id": "schema:CompletedActionStatus" + }, + "pitfall": "https://w3id.org/rsmetacheck/catalog/#P002", + "output": "true", + "evidence": "P002 detected: LICENSE file contains unreplaced template placeholders", + "suggestion": "Update the copyright section with accurate names, organizations, and the current year. Personalizing this section ensures clarity and legal accuracy.", + "checkId": "8454f0d79563a0ecd16bd6e439d5a76d282cc8071ca936f496d2c8fa8073ec6f" + }, + { + "@type": "CheckResult", + "assessesIndicator": { + "@id": "https://w3id.org/example/metacheck/i/indicators/codemeta" + }, + "checkingSoftware": { + "@type": "schema:SoftwareApplication", + "name": "metacheck", + "@id": "https://w3id.org/example/metacheck/tools/", + "softwareVersion": "0.2.0" + }, + "process": "Checks the identifier field in codemeta.json to see if it uses a bare DOI string instead of a full HTTPS URL.", + "status": { + "@id": "schema:CompletedActionStatus" + }, + "pitfall": "https://w3id.org/rsmetacheck/catalog/#P014", + "output": "true", + "evidence": "P014 detected: codemeta.json Identifier uses bare DOI instead of full URL: '10.5281/zenodo.5742053'", + "suggestion": "You should include the full DOI URL form in your metadata (e.g., https://doi.org/XX.XXXX/zenodo.XXXX)", + "checkId": "5332af69762b78de21b8b3f64a63a6fc781cc390029bc18fab5adbd4e1565953" + }, + { + "@type": "CheckResult", + "assessesIndicator": { + "@id": "https://w3id.org/example/metacheck/i/indicators/codemeta" + }, + "checkingSoftware": { + "@type": "schema:SoftwareApplication", + "name": "metacheck", + "@id": "https://w3id.org/example/metacheck/tools/", + "softwareVersion": "0.2.0" + }, + "process": "Detects if multiple distinct licenses are found in the repository but only a single license is declared in codemeta.json.", + "status": { + "@id": "schema:CompletedActionStatus" + }, + "pitfall": "https://w3id.org/rsmetacheck/catalog/#W003", + "output": "true", + "evidence": "W003 detected: Repository has multiple licenses but codemeta.json only lists one. Found in: https:///rhys.poulton/escape-datalake-shared-volume-writer/-/blob/main/LICENSE", + "suggestion": "Make sure you are using the correct licenses. This avoids confusion about terms of use and ensures full transparency.", + "checkId": "3dbc3727e714a3623407acc90516150321adddd8b06d7552db68a1356e88dbc8" + }, + { + "@type": "CheckResult", + "assessesIndicator": { + "@id": "https://w3id.org/example/metacheck/i/indicators/codemeta" + }, + "checkingSoftware": { + "@type": "schema:SoftwareApplication", + "name": "metacheck", + "@id": "https://w3id.org/example/metacheck/tools/", + "softwareVersion": "0.2.0" + }, + "process": "Checks programming language declarations in codemeta.json to see if they lack specific version numbers.", + "status": { + "@id": "schema:CompletedActionStatus" + }, + "pitfall": "https://w3id.org/rsmetacheck/catalog/#W004", + "output": "true", + "evidence": "W004 detected: codemeta.json Programming languages without versions: Python, bash", + "suggestion": "Include version numbers for each programming language used. Defining these helps ensure reproducibility and compatibility across systems.", + "checkId": "79c379cb7ed9ae82341ac78424c44cb61bbafca03f7142d9da9c69e1017b964d" + } + ] +} \ No newline at end of file diff --git a/assets/existing_metacheck_analysis/example_pitfall_3.jsonld b/assets/existing_metacheck_analysis/example_pitfall_3.jsonld new file mode 100644 index 0000000..1b552a6 --- /dev/null +++ b/assets/existing_metacheck_analysis/example_pitfall_3.jsonld @@ -0,0 +1,109 @@ +{ + "@context": "[IN PROCESS]", + "@type": "SoftwareQualityAssessment", + "name": "Quality Assessment for AMIGA-IAA/hcg-16", + "description": "HCG-16 Project", + "creator": { + "@type": "schema:Person", + "name": "Anonymous", + "email": "example@email.com" + }, + "dateCreated": "2026-03-05T15:57:03Z", + "license": { + "@id": "https://opensource.org/license/mit" + }, + "commit_id": "3e46b026f96b30c4b7d69546720bdb9debb07f99", + "assessedSoftware": { + "@type": "schema:SoftwareApplication", + "name": "AMIGA-IAA/hcg-16", + "softwareVersion": "v1.2.3", + "url": "https://github.com/AMIGA-IAA/hcg-16", + "commit_id": "3e46b026f96b30c4b7d69546720bdb9debb07f99" + }, + "checks": [ + { + "@type": "CheckResult", + "assessesIndicator": { + "@id": "https://w3id.org/example/metacheck/i/indicators/metadatafile" + }, + "checkingSoftware": { + "@type": "schema:SoftwareApplication", + "name": "metacheck", + "@id": "https://w3id.org/example/metacheck/tools/", + "softwareVersion": "0.2.0" + }, + "process": "Compares the version found in the metadata file with the latest repository release tag.", + "status": { + "@id": "schema:CompletedActionStatus" + }, + "pitfall": "https://w3id.org/rsmetacheck/catalog/#P001", + "output": "true", + "evidence": "P001 detected: codemeta.json version '1.2.1' does not match release version '1.2.3'", + "suggestion": "Ensure the version in your metadata matches the latest official release. Keeping these synchronized avoids confusion for users and improves reproducibility.", + "checkId": "36bc1bbaee0838ae68e47514b4ad7ef566f44f66ee3e3175a1168277ac4326d3" + }, + { + "@type": "CheckResult", + "assessesIndicator": { + "@id": "https://w3id.org/example/metacheck/i/indicators/metadatafile" + }, + "checkingSoftware": { + "@type": "schema:SoftwareApplication", + "name": "metacheck", + "@id": "https://w3id.org/example/metacheck/tools/", + "softwareVersion": "0.2.0" + }, + "process": "Analyzes software requirements in metadata to see if they lack explicit version constraints.", + "status": { + "@id": "schema:CompletedActionStatus" + }, + "pitfall": "https://w3id.org/rsmetacheck/catalog/#W001", + "output": "true", + "evidence": "W001 detected: codemeta.json contains software requirements without versions: https://github.com/AMIGA-IAA/hcg-16/blob/master/conda-linux-64.lock", + "suggestion": "Add version numbers to your dependencies. This provides stability for users and allows reproducibility across different environments.", + "checkId": "c7bc3040b51b441ad9224cabe8a9f65cf6473a0ad2ddfa26386894fd3a526d5e" + }, + { + "@type": "CheckResult", + "assessesIndicator": { + "@id": "https://w3id.org/example/metacheck/i/indicators/codemeta" + }, + "checkingSoftware": { + "@type": "schema:SoftwareApplication", + "name": "metacheck", + "@id": "https://w3id.org/example/metacheck/tools/", + "softwareVersion": "0.2.0" + }, + "process": "Compares the dateModified field against the last updated date of the actual repository.", + "status": { + "@id": "schema:CompletedActionStatus" + }, + "pitfall": "https://w3id.org/rsmetacheck/catalog/#W002", + "output": "true", + "evidence": "W002 detected: codemeta.json dateModified '2021-09-28T00:00:00' is outdated compared to repository date '2023-06-14T17:26:23'", + "suggestion": "The data in the metadata file should be updated to be aligned with the date of the latest release. Automating this synchronization as part of your release process is highly recommended.", + "checkId": "9899b42e1ee09c93bf269e81574db71daca18a345e1f9f5bd43f6022fcf39fba" + }, + { + "@type": "CheckResult", + "assessesIndicator": { + "@id": "https://w3id.org/example/metacheck/i/indicators/codemeta" + }, + "checkingSoftware": { + "@type": "schema:SoftwareApplication", + "name": "metacheck", + "@id": "https://w3id.org/example/metacheck/tools/", + "softwareVersion": "0.2.0" + }, + "process": "Checks programming language declarations in codemeta.json to see if they lack specific version numbers.", + "status": { + "@id": "schema:CompletedActionStatus" + }, + "pitfall": "https://w3id.org/rsmetacheck/catalog/#W004", + "output": "true", + "evidence": "W004 detected: codemeta.json Programming languages without versions: Python", + "suggestion": "Include version numbers for each programming language used. Defining these helps ensure reproducibility and compatibility across systems.", + "checkId": "9afd141924d0a42df9c1b53a6552790dccf6bd40886d704cb8699191578eb846" + } + ] +} \ No newline at end of file diff --git a/assets/existing_metacheck_analysis/example_pitfall_4.jsonld b/assets/existing_metacheck_analysis/example_pitfall_4.jsonld new file mode 100644 index 0000000..ac8b4e9 --- /dev/null +++ b/assets/existing_metacheck_analysis/example_pitfall_4.jsonld @@ -0,0 +1,70 @@ +{ + "@context": "[IN PROCESS]", + "@type": "SoftwareQualityAssessment", + "name": "Quality Assessment for FairRootGroup/FairMQ", + "description": "C++ Message Queuing Library and Framework", + "creator": { + "@type": "schema:Person", + "name": "Anonymous", + "email": "example@email.com" + }, + "dateCreated": "2026-03-05T15:55:22Z", + "license": { + "@id": "https://opensource.org/license/mit" + }, + "commit_id": "fa64faf3f755e9b00e0af738826718bf5117c8ea", + "assessedSoftware": { + "@type": "schema:SoftwareApplication", + "name": "FairRootGroup/FairMQ", + "softwareVersion": "v1.10.1", + "url": "https://github.com/FairRootGroup/FairMQ", + "schema:identifier": { + "@id": "https://doi.org/10.5281/zenodo.1689985" + }, + "commit_id": "fa64faf3f755e9b00e0af738826718bf5117c8ea" + }, + "checks": [ + { + "@type": "CheckResult", + "assessesIndicator": { + "@id": "https://w3id.org/example/metacheck/i/indicators/metadatafile" + }, + "checkingSoftware": { + "@type": "schema:SoftwareApplication", + "name": "metacheck", + "@id": "https://w3id.org/example/metacheck/tools/", + "softwareVersion": "0.2.0" + }, + "process": "Compares the version found in the metadata file with the latest repository release tag.", + "status": { + "@id": "schema:CompletedActionStatus" + }, + "pitfall": "https://w3id.org/rsmetacheck/catalog/#P001", + "output": "true", + "evidence": "P001 detected: codemeta.json version 'master' does not match release version '1.10.1'", + "suggestion": "Ensure the version in your metadata matches the latest official release. Keeping these synchronized avoids confusion for users and improves reproducibility.", + "checkId": "e41e9300f64f91efe5164dbcf3013229f358f8f920e5861c10c81aecfebac2d0" + }, + { + "@type": "CheckResult", + "assessesIndicator": { + "@id": "https://w3id.org/example/metacheck/i/indicators/metadatafile" + }, + "checkingSoftware": { + "@type": "schema:SoftwareApplication", + "name": "metacheck", + "@id": "https://w3id.org/example/metacheck/tools/", + "softwareVersion": "0.2.0" + }, + "process": "Checks if the License property in the metadata file points to a local file path instead of an SPDX license identifier.", + "status": { + "@id": "schema:CompletedActionStatus" + }, + "pitfall": "https://w3id.org/rsmetacheck/catalog/#P006", + "output": "true", + "evidence": "P006 detected: codemeta.json License points to local file instead of license name: './COPYRIGHT'", + "suggestion": "You need to replace local file paths with recognized SPDX license identifiers, such as MIT or GPL-3.0-only in URL form. This ensures your license can be correctly detected by automated tools.", + "checkId": "406196bfdc138505c4aea1a00c2ac38e5b9972b95562427db5f53abbedbf5232" + } + ] +} \ No newline at end of file diff --git a/assets/existing_metacheck_analysis/example_pitfall_5.jsonld b/assets/existing_metacheck_analysis/example_pitfall_5.jsonld new file mode 100644 index 0000000..9410f60 --- /dev/null +++ b/assets/existing_metacheck_analysis/example_pitfall_5.jsonld @@ -0,0 +1,70 @@ +{ + "@context": "[IN PROCESS]", + "@type": "SoftwareQualityAssessment", + "name": "Quality Assessment for IndexedConv/IndexedConv", + "description": "Code for the indexed convolution", + "creator": { + "@type": "schema:Person", + "name": "Anonymous", + "email": "example@email.com" + }, + "dateCreated": "2026-03-05T15:57:10Z", + "license": { + "@id": "https://opensource.org/license/mit" + }, + "commit_id": "62d46bc283a911a7e38c79195f7cd25428dba112", + "assessedSoftware": { + "@type": "schema:SoftwareApplication", + "name": "IndexedConv/IndexedConv", + "softwareVersion": "v1.3.2", + "url": "https://github.com/IndexedConv/IndexedConv", + "schema:identifier": { + "@id": "https://doi.org/10.5281/zenodo.2542651" + }, + "commit_id": "62d46bc283a911a7e38c79195f7cd25428dba112" + }, + "checks": [ + { + "@type": "CheckResult", + "assessesIndicator": { + "@id": "https://w3id.org/example/metacheck/i/indicators/codemeta" + }, + "checkingSoftware": { + "@type": "schema:SoftwareApplication", + "name": "metacheck", + "@id": "https://w3id.org/example/metacheck/tools/", + "softwareVersion": "0.2.0" + }, + "process": "Compares the dateModified field against the last updated date of the actual repository.", + "status": { + "@id": "schema:CompletedActionStatus" + }, + "pitfall": "https://w3id.org/rsmetacheck/catalog/#W002", + "output": "true", + "evidence": "W002 detected: codemeta.json dateModified '2024-04-05T00:00:00' is outdated compared to repository date '2026-03-04T14:06:26'", + "suggestion": "The data in the metadata file should be updated to be aligned with the date of the latest release. Automating this synchronization as part of your release process is highly recommended.", + "checkId": "194f9735a1916b672922ad2a73d6f142b30bce64a7d84a3be62be82e3e53f3ae" + }, + { + "@type": "CheckResult", + "assessesIndicator": { + "@id": "https://w3id.org/example/metacheck/i/indicators/codemeta" + }, + "checkingSoftware": { + "@type": "schema:SoftwareApplication", + "name": "metacheck", + "@id": "https://w3id.org/example/metacheck/tools/", + "softwareVersion": "0.2.0" + }, + "process": "Checks programming language declarations in codemeta.json to see if they lack specific version numbers.", + "status": { + "@id": "schema:CompletedActionStatus" + }, + "pitfall": "https://w3id.org/rsmetacheck/catalog/#W004", + "output": "true", + "evidence": "W004 detected: codemeta.json Programming languages without versions: Python 3.8", + "suggestion": "Include version numbers for each programming language used. Defining these helps ensure reproducibility and compatibility across systems.", + "checkId": "6d43d42bb77a7d22a68e8fcf8f3f36a16b5b60bd1d4c4ed638c92db88a273f2b" + } + ] +} \ No newline at end of file diff --git a/assets/existing_metacheck_analysis/repo_list_output_1_pitfalls.jsonld b/assets/existing_metacheck_analysis/repo_list_output_1_pitfalls.jsonld deleted file mode 100644 index f67954e..0000000 --- a/assets/existing_metacheck_analysis/repo_list_output_1_pitfalls.jsonld +++ /dev/null @@ -1,99 +0,0 @@ -{ - "@context": "https://w3id.org/example/metacheck/0.1.0/", - "@type": "SoftwareQualityAssessment", - "name": "Quality Assessment for cds-astro/cds-moc-rust", - "description": "MOC library in Rust; used in MOCPy, a CLI, a WASM lib, ...", - "creator": { - "@type": "schema:Person", - "name": "Anonymous", - "email": "example@email.com" - }, - "dateCreated": "2025-12-17T15:42:57Z", - "license": [ - "@id: https://opensource.org/license/mit" - ], - "assessedSoftware": { - "@type": "schema:SoftwareApplication", - "name": "cds-astro/cds-moc-rust", - "softwareVersion": "v0.11.0", - "url": "https://github.com/cds-astro/cds-moc-rust" - }, - "checks": [ - { - "@type": "CheckResult", - "assessesIndicator": { - "@id": "https://w3id.org/example/metacheck/i/indicators/metadatafile" - }, - "checkingSoftware": { - "@type": "schema:SoftwareApplication", - "name": "metacheck", - "@id": "https://w3id.org/example/metacheck/tools/", - "softwareVersion": "0.1.0" - }, - "process": "The metadata file (codemeta or other) has a version which does not correspond to the version used in the latest release", - "status": { - "@id": "schema:CompletedActionStatus" - }, - "checkId": "P001", - "evidence": "P001 detected: codemeta.json version '0.6.0' does not match release version '0.11.0'", - "suggestion": "Ensure the version in your metadata matches the latest official release. Keeping these synchronized avoids confusion for users and improves reproducibility." - }, - { - "@type": "CheckResult", - "assessesIndicator": { - "@id": "https://w3id.org/example/metacheck/i/indicators/license" - }, - "checkingSoftware": { - "@type": "schema:SoftwareApplication", - "name": "metacheck", - "@id": "https://w3id.org/example/metacheck/tools/", - "softwareVersion": "0.1.0" - }, - "process": "codemeta.json version does not match the package's", - "status": { - "@id": "schema:CompletedActionStatus" - }, - "checkId": "P017", - "evidence": "P017 detected: LICENSE file only contains copyright information without actual license terms", - "suggestion": "You need to synchronize all version references across metadata and build configuration files." - }, - { - "@type": "CheckResult", - "assessesIndicator": { - "@id": "https://w3id.org/example/metacheck/i/indicators/metadatafile" - }, - "checkingSoftware": { - "@type": "schema:SoftwareApplication", - "name": "metacheck", - "@id": "https://w3id.org/example/metacheck/tools/", - "softwareVersion": "0.1.0" - }, - "process": "codemeta.json dateModified is outdated compared to the actual repository last update date", - "status": { - "@id": "schema:CompletedActionStatus" - }, - "checkId": "W002", - "evidence": "W002 detected: Issue detected in repo_list_output_1.json", - "suggestion": "You need to align the version in your metadata file with your latest release tag. Automating this synchronization as part of your release process is highly recommended." - }, - { - "@type": "CheckResult", - "assessesIndicator": { - "@id": "https://w3id.org/example/metacheck/i/indicators/codemeta" - }, - "checkingSoftware": { - "@type": "schema:SoftwareApplication", - "name": "metacheck", - "@id": "https://w3id.org/example/metacheck/tools/", - "softwareVersion": "0.1.0" - }, - "process": "Programming languages in codemeta.json do not have versions", - "status": { - "@id": "schema:CompletedActionStatus" - }, - "checkId": "W004", - "evidence": "W004 detected: dateModified in codemeta.json is outdated compared to actual repository last update", - "suggestion": "Include version numbers for each programming language used. Defining these helps ensure reproducibility and compatibility across systems." - } - ] -} \ No newline at end of file diff --git a/assets/existing_metacheck_analysis/repo_list_output_2_pitfalls.jsonld b/assets/existing_metacheck_analysis/repo_list_output_2_pitfalls.jsonld deleted file mode 100644 index 277f71c..0000000 --- a/assets/existing_metacheck_analysis/repo_list_output_2_pitfalls.jsonld +++ /dev/null @@ -1,140 +0,0 @@ -{ - "@context": "https://w3id.org/example/metacheck/0.1.0/", - "@type": "SoftwareQualityAssessment", - "name": "Quality Assessment for R3BRootGroup/R3BRoot", - "description": "Framework for Simulations and Data Analysis of R3B Experiments at GSI/FAIR", - "creator": { - "@type": "schema:Person", - "name": "Anonymous", - "email": "example@email.com" - }, - "dateCreated": "2025-12-17T15:42:53Z", - "license": [ - "@id: https://opensource.org/license/mit" - ], - "assessedSoftware": { - "@type": "schema:SoftwareApplication", - "name": "R3BRootGroup/R3BRoot", - "softwareVersion": "sep25", - "url": "https://github.com/R3BRootGroup/R3BRoot", - "schema:identifier": { - "@id": "https://doi.org/10.5281/zenodo.5549469" - } - }, - "checks": [ - { - "@type": "CheckResult", - "assessesIndicator": { - "@id": "https://w3id.org/example/metacheck/i/indicators/metadatafile" - }, - "checkingSoftware": { - "@type": "schema:SoftwareApplication", - "name": "metacheck", - "@id": "https://w3id.org/example/metacheck/tools/", - "softwareVersion": "0.1.0" - }, - "process": "The metadata file (codemeta or other) has a version which does not correspond to the version used in the latest release", - "status": { - "@id": "schema:CompletedActionStatus" - }, - "checkId": "P001", - "evidence": "P001 detected: codemeta.json version '25.0.3' does not match release version 'sep25'", - "suggestion": "Ensure the version in your metadata matches the latest official release. Keeping these synchronized avoids confusion for users and improves reproducibility." - }, - { - "@type": "CheckResult", - "assessesIndicator": { - "@id": "https://w3id.org/example/metacheck/i/indicators/metadatafile" - }, - "checkingSoftware": { - "@type": "schema:SoftwareApplication", - "name": "metacheck", - "@id": "https://w3id.org/example/metacheck/tools/", - "softwareVersion": "0.1.0" - }, - "process": "The metadata file (codemeta or other) Software requirements don't have version specifications", - "status": { - "@id": "schema:CompletedActionStatus" - }, - "checkId": "W001", - "evidence": "W001 detected: Issue detected in repo_list_output_2.json", - "suggestion": "Add version numbers to your dependencies. This provides stability for users and allows reproducibility across different environments." - }, - { - "@type": "CheckResult", - "assessesIndicator": { - "@id": "https://w3id.org/example/metacheck/i/indicators/metadatafile" - }, - "checkingSoftware": { - "@type": "schema:SoftwareApplication", - "name": "metacheck", - "@id": "https://w3id.org/example/metacheck/tools/", - "softwareVersion": "0.1.0" - }, - "process": "codemeta.json dateModified is outdated compared to the actual repository last update date", - "status": { - "@id": "schema:CompletedActionStatus" - }, - "checkId": "W002", - "evidence": "W002 detected: Issue detected in repo_list_output_2.json", - "suggestion": "You need to align the version in your metadata file with your latest release tag. Automating this synchronization as part of your release process is highly recommended." - }, - { - "@type": "CheckResult", - "assessesIndicator": { - "@id": "https://w3id.org/example/metacheck/i/indicators/metadatafile" - }, - "checkingSoftware": { - "@type": "schema:SoftwareApplication", - "name": "metacheck", - "@id": "https://w3id.org/example/metacheck/tools/", - "softwareVersion": "0.1.0" - }, - "process": "Repository has multiple licenses but in codemeta.json only has one listed", - "status": { - "@id": "schema:CompletedActionStatus" - }, - "checkId": "W003", - "evidence": "W003 detected: Software requirements found without version specifications", - "suggestion": "Make sure you are using the correct licenses. This avoids confusion about terms of use and ensures full transparency." - }, - { - "@type": "CheckResult", - "assessesIndicator": { - "@id": "https://w3id.org/example/metacheck/i/indicators/codemeta" - }, - "checkingSoftware": { - "@type": "schema:SoftwareApplication", - "name": "metacheck", - "@id": "https://w3id.org/example/metacheck/tools/", - "softwareVersion": "0.1.0" - }, - "process": "Programming languages in codemeta.json do not have versions", - "status": { - "@id": "schema:CompletedActionStatus" - }, - "checkId": "W004", - "evidence": "W004 detected: dateModified in codemeta.json is outdated compared to actual repository last update", - "suggestion": "Include version numbers for each programming language used. Defining these helps ensure reproducibility and compatibility across systems." - }, - { - "@type": "CheckResult", - "assessesIndicator": { - "@id": "https://w3id.org/example/metacheck/i/indicators/metadatafile" - }, - "checkingSoftware": { - "@type": "schema:SoftwareApplication", - "name": "metacheck", - "@id": "https://w3id.org/example/metacheck/tools/", - "softwareVersion": "0.1.0" - }, - "process": "The metadata file (codemeta or other) softwareRequirements have more than one req, but it's written as one string", - "status": { - "@id": "schema:CompletedActionStatus" - }, - "checkId": "W005", - "evidence": "W005 detected: Issue detected in repo_list_output_2.json", - "suggestion": "Rewrite your dependencies as a proper list, with each item separated and preferably with their versions. This makes them easier to parse for metadata systems." - } - ] -} \ No newline at end of file diff --git a/assets/existing_metacheck_analysis/repo_list_output_3_pitfalls.jsonld b/assets/existing_metacheck_analysis/repo_list_output_3_pitfalls.jsonld deleted file mode 100644 index 71a4522..0000000 --- a/assets/existing_metacheck_analysis/repo_list_output_3_pitfalls.jsonld +++ /dev/null @@ -1,140 +0,0 @@ -{ - "@context": "https://w3id.org/example/metacheck/0.1.0/", - "@type": "SoftwareQualityAssessment", - "name": "Quality Assessment for ctlearn-project/ctlearn", - "description": "Deep Learning for IACT Event Reconstruction", - "creator": { - "@type": "schema:Person", - "name": "Anonymous", - "email": "example@email.com" - }, - "dateCreated": "2025-12-17T15:43:11Z", - "license": [ - "@id: https://opensource.org/license/mit" - ], - "assessedSoftware": { - "@type": "schema:SoftwareApplication", - "name": "ctlearn-project/ctlearn", - "softwareVersion": "v0.10.2", - "url": "https://github.com/ctlearn-project/ctlearn", - "schema:identifier": { - "@id": "https://doi.org/10.5281/zenodo.3342952" - } - }, - "checks": [ - { - "@type": "CheckResult", - "assessesIndicator": { - "@id": "https://w3id.org/example/metacheck/i/indicators/metadatafile" - }, - "checkingSoftware": { - "@type": "schema:SoftwareApplication", - "name": "metacheck", - "@id": "https://w3id.org/example/metacheck/tools/", - "softwareVersion": "0.1.0" - }, - "process": "In codemeta.json README property pointing to their homepage/wiki instead of README file", - "status": { - "@id": "schema:CompletedActionStatus" - }, - "checkId": "P004", - "evidence": "P004 detected: Issue detected in repo_list_output_3.json", - "suggestion": "Update the README property so it points directly to your actual README file instead of your homepage. This helps ensure users and automated tools can access your project documentation easily." - }, - { - "@type": "CheckResult", - "assessesIndicator": { - "@id": "https://w3id.org/example/metacheck/i/indicators/metadatafile" - }, - "checkingSoftware": { - "@type": "schema:SoftwareApplication", - "name": "metacheck", - "@id": "https://w3id.org/example/metacheck/tools/", - "softwareVersion": "0.1.0" - }, - "process": "codemeta.json referencePublication refers to software archive instead of paper", - "status": { - "@id": "schema:CompletedActionStatus" - }, - "checkId": "P005", - "evidence": "P005 detected: Issue detected in repo_list_output_3.json", - "suggestion": "Ensure that the referencePublication field points to the scholarly paper describing the software, not to a software archive or repository entry." - }, - { - "@type": "CheckResult", - "assessesIndicator": { - "@id": "https://w3id.org/example/metacheck/i/indicators/metadatafile" - }, - "checkingSoftware": { - "@type": "schema:SoftwareApplication", - "name": "metacheck", - "@id": "https://w3id.org/example/metacheck/tools/", - "softwareVersion": "0.1.0" - }, - "process": "The metadata file (codemeta or other) License does not have the specific version", - "status": { - "@id": "schema:CompletedActionStatus" - }, - "checkId": "P013", - "evidence": "P013 detected: Software requirements contain invalid URLs", - "suggestion": "You should declare the specific version of the license using a recognized SPDX identifier. For example, use 'GPL-3.0-only' or 'GPL-2.0-or-later' instead of simply 'GPL'" - }, - { - "@type": "CheckResult", - "assessesIndicator": { - "@id": "https://w3id.org/example/metacheck/i/indicators/metadatafile" - }, - "checkingSoftware": { - "@type": "schema:SoftwareApplication", - "name": "metacheck", - "@id": "https://w3id.org/example/metacheck/tools/", - "softwareVersion": "0.1.0" - }, - "process": "codemeta.json uses bare DOIs in the identifier field instead of full https://doi.org/ URL", - "status": { - "@id": "schema:CompletedActionStatus" - }, - "checkId": "P014", - "evidence": "P014 detected: Issue detected in repo_list_output_3.json", - "suggestion": "You should include the full DOI URL form in your metadata (e.g., https://doi.org/XX.XXXX/zenodo.XXXX)" - }, - { - "@type": "CheckResult", - "assessesIndicator": { - "@id": "https://w3id.org/example/metacheck/i/indicators/metadatafile" - }, - "checkingSoftware": { - "@type": "schema:SoftwareApplication", - "name": "metacheck", - "@id": "https://w3id.org/example/metacheck/tools/", - "softwareVersion": "0.1.0" - }, - "process": "codemeta.json dateModified is outdated compared to the actual repository last update date", - "status": { - "@id": "schema:CompletedActionStatus" - }, - "checkId": "W002", - "evidence": "W002 detected: Issue detected in repo_list_output_3.json", - "suggestion": "You need to align the version in your metadata file with your latest release tag. Automating this synchronization as part of your release process is highly recommended." - }, - { - "@type": "CheckResult", - "assessesIndicator": { - "@id": "https://w3id.org/example/metacheck/i/indicators/codemeta" - }, - "checkingSoftware": { - "@type": "schema:SoftwareApplication", - "name": "metacheck", - "@id": "https://w3id.org/example/metacheck/tools/", - "softwareVersion": "0.1.0" - }, - "process": "Programming languages in codemeta.json do not have versions", - "status": { - "@id": "schema:CompletedActionStatus" - }, - "checkId": "W004", - "evidence": "W004 detected: dateModified in codemeta.json is outdated compared to actual repository last update", - "suggestion": "Include version numbers for each programming language used. Defining these helps ensure reproducibility and compatibility across systems." - } - ] -} \ No newline at end of file diff --git a/assets/existing_metacheck_analysis/repo_list_output_4_pitfalls.jsonld b/assets/existing_metacheck_analysis/repo_list_output_4_pitfalls.jsonld deleted file mode 100644 index 09f6d09..0000000 --- a/assets/existing_metacheck_analysis/repo_list_output_4_pitfalls.jsonld +++ /dev/null @@ -1,140 +0,0 @@ -{ - "@context": "https://w3id.org/example/metacheck/0.1.0/", - "@type": "SoftwareQualityAssessment", - "name": "Quality Assessment for cds-astro/aladin-lite", - "description": "An astronomical HiPS visualizer in the browser", - "creator": { - "@type": "schema:Person", - "name": "Anonymous", - "email": "example@email.com" - }, - "dateCreated": "2025-12-17T15:43:02Z", - "license": [ - "@id: https://opensource.org/license/mit" - ], - "assessedSoftware": { - "@type": "schema:SoftwareApplication", - "name": "cds-astro/aladin-lite", - "softwareVersion": "v3.7.1-beta", - "url": "https://github.com/cds-astro/aladin-lite", - "schema:identifier": { - "@id": "https://doi.org/10.5281/zenodo.7638833" - } - }, - "checks": [ - { - "@type": "CheckResult", - "assessesIndicator": { - "@id": "https://w3id.org/example/metacheck/i/indicators/metadatafile" - }, - "checkingSoftware": { - "@type": "schema:SoftwareApplication", - "name": "metacheck", - "@id": "https://w3id.org/example/metacheck/tools/", - "softwareVersion": "0.1.0" - }, - "process": "The metadata file (codemeta or other) has a version which does not correspond to the version used in the latest release", - "status": { - "@id": "schema:CompletedActionStatus" - }, - "checkId": "P001", - "evidence": "P001 detected: codemeta.json version '3.6.1' does not match release version '3.7.1-beta'", - "suggestion": "Ensure the version in your metadata matches the latest official release. Keeping these synchronized avoids confusion for users and improves reproducibility." - }, - { - "@type": "CheckResult", - "assessesIndicator": { - "@id": "https://w3id.org/example/metacheck/i/indicators/metadatafile" - }, - "checkingSoftware": { - "@type": "schema:SoftwareApplication", - "name": "metacheck", - "@id": "https://w3id.org/example/metacheck/tools/", - "softwareVersion": "0.1.0" - }, - "process": "The metadata file (codemeta or other) have multiple authors in single field instead of a list", - "status": { - "@id": "schema:CompletedActionStatus" - }, - "checkId": "P003", - "evidence": "P003 detected: Issue detected in repo_list_output_4.json", - "suggestion": "You should separate multiple authors into a structured list. This allows tools and citation systems to correctly identify and credit each contributor." - }, - { - "@type": "CheckResult", - "assessesIndicator": { - "@id": "https://w3id.org/example/metacheck/i/indicators/metadatafile" - }, - "checkingSoftware": { - "@type": "schema:SoftwareApplication", - "name": "metacheck", - "@id": "https://w3id.org/example/metacheck/tools/", - "softwareVersion": "0.1.0" - }, - "process": "codemeta.json uses bare DOIs in the identifier field instead of full https://doi.org/ URL", - "status": { - "@id": "schema:CompletedActionStatus" - }, - "checkId": "P014", - "evidence": "P014 detected: Issue detected in repo_list_output_4.json", - "suggestion": "You should include the full DOI URL form in your metadata (e.g., https://doi.org/XX.XXXX/zenodo.XXXX)" - }, - { - "@type": "CheckResult", - "assessesIndicator": { - "@id": "https://w3id.org/example/metacheck/i/indicators/metadatafile" - }, - "checkingSoftware": { - "@type": "schema:SoftwareApplication", - "name": "metacheck", - "@id": "https://w3id.org/example/metacheck/tools/", - "softwareVersion": "0.1.0" - }, - "process": "codemeta.json dateModified is outdated compared to the actual repository last update date", - "status": { - "@id": "schema:CompletedActionStatus" - }, - "checkId": "W002", - "evidence": "W002 detected: Issue detected in repo_list_output_4.json", - "suggestion": "You need to align the version in your metadata file with your latest release tag. Automating this synchronization as part of your release process is highly recommended." - }, - { - "@type": "CheckResult", - "assessesIndicator": { - "@id": "https://w3id.org/example/metacheck/i/indicators/metadatafile" - }, - "checkingSoftware": { - "@type": "schema:SoftwareApplication", - "name": "metacheck", - "@id": "https://w3id.org/example/metacheck/tools/", - "softwareVersion": "0.1.0" - }, - "process": "Repository has multiple licenses but in codemeta.json only has one listed", - "status": { - "@id": "schema:CompletedActionStatus" - }, - "checkId": "W003", - "evidence": "W003 detected: Software requirements found without version specifications", - "suggestion": "Make sure you are using the correct licenses. This avoids confusion about terms of use and ensures full transparency." - }, - { - "@type": "CheckResult", - "assessesIndicator": { - "@id": "https://w3id.org/example/metacheck/i/indicators/codemeta" - }, - "checkingSoftware": { - "@type": "schema:SoftwareApplication", - "name": "metacheck", - "@id": "https://w3id.org/example/metacheck/tools/", - "softwareVersion": "0.1.0" - }, - "process": "Programming languages in codemeta.json do not have versions", - "status": { - "@id": "schema:CompletedActionStatus" - }, - "checkId": "W004", - "evidence": "W004 detected: dateModified in codemeta.json is outdated compared to actual repository last update", - "suggestion": "Include version numbers for each programming language used. Defining these helps ensure reproducibility and compatibility across systems." - } - ] -} \ No newline at end of file diff --git a/assets/existing_metacheck_analysis/repo_list_output_5_pitfalls.jsonld b/assets/existing_metacheck_analysis/repo_list_output_5_pitfalls.jsonld deleted file mode 100644 index a66013e..0000000 --- a/assets/existing_metacheck_analysis/repo_list_output_5_pitfalls.jsonld +++ /dev/null @@ -1,102 +0,0 @@ -{ - "@context": "https://w3id.org/example/metacheck/0.1.0/", - "@type": "SoftwareQualityAssessment", - "name": "Quality Assessment for javierrico/gLike", - "description": "General-purpose ROOT-based joint likelihood maximization code", - "creator": { - "@type": "schema:Person", - "name": "Anonymous", - "email": "example@email.com" - }, - "dateCreated": "2025-12-17T15:43:02Z", - "license": [ - "@id: https://opensource.org/license/mit" - ], - "assessedSoftware": { - "@type": "schema:SoftwareApplication", - "name": "javierrico/gLike", - "softwareVersion": "v00.10.03", - "url": "https://github.com/javierrico/gLike", - "schema:identifier": { - "@id": "https://doi.org/10.5281/zenodo.3967385" - } - }, - "checks": [ - { - "@type": "CheckResult", - "assessesIndicator": { - "@id": "https://w3id.org/example/metacheck/i/indicators/metadatafile" - }, - "checkingSoftware": { - "@type": "schema:SoftwareApplication", - "name": "metacheck", - "@id": "https://w3id.org/example/metacheck/tools/", - "softwareVersion": "0.1.0" - }, - "process": "codemeta.json uses bare DOIs in the identifier field instead of full https://doi.org/ URL", - "status": { - "@id": "schema:CompletedActionStatus" - }, - "checkId": "P014", - "evidence": "P014 detected: Issue detected in repo_list_output_5.json", - "suggestion": "You should include the full DOI URL form in your metadata (e.g., https://doi.org/XX.XXXX/zenodo.XXXX)" - }, - { - "@type": "CheckResult", - "assessesIndicator": { - "@id": "https://w3id.org/example/metacheck/i/indicators/metadatafile" - }, - "checkingSoftware": { - "@type": "schema:SoftwareApplication", - "name": "metacheck", - "@id": "https://w3id.org/example/metacheck/tools/", - "softwareVersion": "0.1.0" - }, - "process": "codemeta.json dateModified is outdated compared to the actual repository last update date", - "status": { - "@id": "schema:CompletedActionStatus" - }, - "checkId": "W002", - "evidence": "W002 detected: Issue detected in repo_list_output_5.json", - "suggestion": "You need to align the version in your metadata file with your latest release tag. Automating this synchronization as part of your release process is highly recommended." - }, - { - "@type": "CheckResult", - "assessesIndicator": { - "@id": "https://w3id.org/example/metacheck/i/indicators/metadatafile" - }, - "checkingSoftware": { - "@type": "schema:SoftwareApplication", - "name": "metacheck", - "@id": "https://w3id.org/example/metacheck/tools/", - "softwareVersion": "0.1.0" - }, - "process": "Repository has multiple licenses but in codemeta.json only has one listed", - "status": { - "@id": "schema:CompletedActionStatus" - }, - "checkId": "W003", - "evidence": "W003 detected: Software requirements found without version specifications", - "suggestion": "Make sure you are using the correct licenses. This avoids confusion about terms of use and ensures full transparency." - }, - { - "@type": "CheckResult", - "assessesIndicator": { - "@id": "https://w3id.org/example/metacheck/i/indicators/codemeta" - }, - "checkingSoftware": { - "@type": "schema:SoftwareApplication", - "name": "metacheck", - "@id": "https://w3id.org/example/metacheck/tools/", - "softwareVersion": "0.1.0" - }, - "process": "Programming languages in codemeta.json do not have versions", - "status": { - "@id": "schema:CompletedActionStatus" - }, - "checkId": "W004", - "evidence": "W004 detected: dateModified in codemeta.json is outdated compared to actual repository last update", - "suggestion": "Include version numbers for each programming language used. Defining these helps ensure reproducibility and compatibility across systems." - } - ] -} \ No newline at end of file diff --git a/assets/existing_metacheck_analysis/repo_list_output_6_pitfalls.jsonld b/assets/existing_metacheck_analysis/repo_list_output_6_pitfalls.jsonld deleted file mode 100644 index f71e6f1..0000000 --- a/assets/existing_metacheck_analysis/repo_list_output_6_pitfalls.jsonld +++ /dev/null @@ -1,140 +0,0 @@ -{ - "@context": "https://w3id.org/example/metacheck/0.1.0/", - "@type": "SoftwareQualityAssessment", - "name": "Quality Assessment for cds-astro/aladin-lite", - "description": "An astronomical HiPS visualizer in the browser", - "creator": { - "@type": "schema:Person", - "name": "Anonymous", - "email": "example@email.com" - }, - "dateCreated": "2025-12-17T15:43:11Z", - "license": [ - "@id: https://opensource.org/license/mit" - ], - "assessedSoftware": { - "@type": "schema:SoftwareApplication", - "name": "cds-astro/aladin-lite", - "softwareVersion": "v3.7.1-beta", - "url": "https://github.com/cds-astro/aladin-lite", - "schema:identifier": { - "@id": "https://doi.org/10.5281/zenodo.7638833" - } - }, - "checks": [ - { - "@type": "CheckResult", - "assessesIndicator": { - "@id": "https://w3id.org/example/metacheck/i/indicators/metadatafile" - }, - "checkingSoftware": { - "@type": "schema:SoftwareApplication", - "name": "metacheck", - "@id": "https://w3id.org/example/metacheck/tools/", - "softwareVersion": "0.1.0" - }, - "process": "The metadata file (codemeta or other) has a version which does not correspond to the version used in the latest release", - "status": { - "@id": "schema:CompletedActionStatus" - }, - "checkId": "P001", - "evidence": "P001 detected: codemeta.json version '3.6.1' does not match release version '3.7.1-beta'", - "suggestion": "Ensure the version in your metadata matches the latest official release. Keeping these synchronized avoids confusion for users and improves reproducibility." - }, - { - "@type": "CheckResult", - "assessesIndicator": { - "@id": "https://w3id.org/example/metacheck/i/indicators/metadatafile" - }, - "checkingSoftware": { - "@type": "schema:SoftwareApplication", - "name": "metacheck", - "@id": "https://w3id.org/example/metacheck/tools/", - "softwareVersion": "0.1.0" - }, - "process": "The metadata file (codemeta or other) have multiple authors in single field instead of a list", - "status": { - "@id": "schema:CompletedActionStatus" - }, - "checkId": "P003", - "evidence": "P003 detected: Issue detected in repo_list_output_6.json", - "suggestion": "You should separate multiple authors into a structured list. This allows tools and citation systems to correctly identify and credit each contributor." - }, - { - "@type": "CheckResult", - "assessesIndicator": { - "@id": "https://w3id.org/example/metacheck/i/indicators/metadatafile" - }, - "checkingSoftware": { - "@type": "schema:SoftwareApplication", - "name": "metacheck", - "@id": "https://w3id.org/example/metacheck/tools/", - "softwareVersion": "0.1.0" - }, - "process": "codemeta.json uses bare DOIs in the identifier field instead of full https://doi.org/ URL", - "status": { - "@id": "schema:CompletedActionStatus" - }, - "checkId": "P014", - "evidence": "P014 detected: Issue detected in repo_list_output_6.json", - "suggestion": "You should include the full DOI URL form in your metadata (e.g., https://doi.org/XX.XXXX/zenodo.XXXX)" - }, - { - "@type": "CheckResult", - "assessesIndicator": { - "@id": "https://w3id.org/example/metacheck/i/indicators/metadatafile" - }, - "checkingSoftware": { - "@type": "schema:SoftwareApplication", - "name": "metacheck", - "@id": "https://w3id.org/example/metacheck/tools/", - "softwareVersion": "0.1.0" - }, - "process": "codemeta.json dateModified is outdated compared to the actual repository last update date", - "status": { - "@id": "schema:CompletedActionStatus" - }, - "checkId": "W002", - "evidence": "W002 detected: Issue detected in repo_list_output_6.json", - "suggestion": "You need to align the version in your metadata file with your latest release tag. Automating this synchronization as part of your release process is highly recommended." - }, - { - "@type": "CheckResult", - "assessesIndicator": { - "@id": "https://w3id.org/example/metacheck/i/indicators/metadatafile" - }, - "checkingSoftware": { - "@type": "schema:SoftwareApplication", - "name": "metacheck", - "@id": "https://w3id.org/example/metacheck/tools/", - "softwareVersion": "0.1.0" - }, - "process": "Repository has multiple licenses but in codemeta.json only has one listed", - "status": { - "@id": "schema:CompletedActionStatus" - }, - "checkId": "W003", - "evidence": "W003 detected: Software requirements found without version specifications", - "suggestion": "Make sure you are using the correct licenses. This avoids confusion about terms of use and ensures full transparency." - }, - { - "@type": "CheckResult", - "assessesIndicator": { - "@id": "https://w3id.org/example/metacheck/i/indicators/codemeta" - }, - "checkingSoftware": { - "@type": "schema:SoftwareApplication", - "name": "metacheck", - "@id": "https://w3id.org/example/metacheck/tools/", - "softwareVersion": "0.1.0" - }, - "process": "Programming languages in codemeta.json do not have versions", - "status": { - "@id": "schema:CompletedActionStatus" - }, - "checkId": "W004", - "evidence": "W004 detected: dateModified in codemeta.json is outdated compared to actual repository last update", - "suggestion": "Include version numbers for each programming language used. Defining these helps ensure reproducibility and compatibility across systems." - } - ] -} \ No newline at end of file diff --git a/codemeta.json b/codemeta.json index f1c875b..1388693 100644 --- a/codemeta.json +++ b/codemeta.json @@ -18,7 +18,7 @@ ], "codeRepository": "https://github.com/SoftwareUnderstanding/sw-metadata-bot", "dateCreated": "2025-12-15", - "dateModified": "2026-01-21", + "dateModified": "2026-03-05", "datePublished": "2026-01-16", "description": "A repository to keep the code of the RSMetaCheck bot for pushing issues with existing repository metadata", "downloadUrl": "https://github.com/SoftwareUnderstanding/sw-metadata-bot/releases", @@ -36,7 +36,7 @@ "metacheck>=0.2.0", "requests>=2.32.5" ], - "version": "0.1.3", + "version": "0.1.4", "codemeta:contIntegration": { "@id": "https://raw.githubusercontent.com/SoftwareUnderstanding/sw-metadata-bot/main/.github/workflows/ci.yml" }, diff --git a/interrogate_badge.svg b/interrogate_badge.svg index 3e6a538..bc91d28 100644 --- a/interrogate_badge.svg +++ b/interrogate_badge.svg @@ -1,10 +1,10 @@ - interrogate: 93.6% + interrogate: 100% - + @@ -12,8 +12,8 @@ interrogate interrogate - 93.6% - 93.6% + 100% + 100% diff --git a/pyproject.toml b/pyproject.toml index 00e7c63..cca666e 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,6 +1,6 @@ [project] name = "sw-metadata-bot" -version = "0.1.3" +version = "0.1.4" description = "RSMetaCheck bot for pushing issues with existing repository metadata" readme = "README.md" requires-python = ">=3.10,<3.13" @@ -50,8 +50,7 @@ docs = [ ] [tool.uv.sources] -metacheck = { git = "https://github.com/SoftwareUnderstanding/RsMetaCheck", rev ="9a32828df95b8cd6dd53052e27974802c23a5de1"} - +metacheck = { git = "https://github.com/SoftwareUnderstanding/RsMetaCheck"} [tool.pytest.ini_options] testpaths = ["tests"] diff --git a/src/sw_metadata_bot/create_issues.py b/src/sw_metadata_bot/create_issues.py index 63eff77..4b8eb0b 100644 --- a/src/sw_metadata_bot/create_issues.py +++ b/src/sw_metadata_bot/create_issues.py @@ -111,8 +111,7 @@ def create_issues_command( issues_dir.mkdir(parents=True, exist_ok=True) # Initialize API clients - github = github_api.GitHubAPI(dry_run=dry_run) - gitlab = gitlab_api.GitLabAPI(dry_run=dry_run) + github, gitlab = None, None mode = "DRY RUN" if dry_run else "PRODUCTION" click.echo(f"\n{'=' * 60}") @@ -181,8 +180,12 @@ def create_issues_command( title = "Automated Metadata Quality Report from CodeMetaSoft" if platform == "github": + if not github: + github = github_api.GitHubAPI(dry_run=dry_run) issue_url = github.create_issue(repo_url, title, body) elif platform == "gitlab.com": + if not gitlab: + gitlab = gitlab_api.GitLabAPI(dry_run=dry_run) issue_url = gitlab.create_issue(repo_url, title, body) else: raise ValueError(f"Unsupported platform: {platform}") diff --git a/src/sw_metadata_bot/pitfalls.py b/src/sw_metadata_bot/pitfalls.py index e46f2f0..8be3b29 100644 --- a/src/sw_metadata_bot/pitfalls.py +++ b/src/sw_metadata_bot/pitfalls.py @@ -1,7 +1,6 @@ """Pitfalls data loading and parsing.""" import json -import re from datetime import datetime from importlib.metadata import version from pathlib import Path @@ -22,16 +21,13 @@ def get_repository_url(data: dict) -> str: def _get_check_code(check: dict) -> str: """Extract check code (e.g. P001/W004) from a check entry.""" - check_id = str(check.get("checkId", "")) - if re.match(r"^[PW]\d+", check_id): - return check_id + PITFALL_ID_KEY = "pitfall" + return str(check.get(PITFALL_ID_KEY, "")) - evidence = str(check.get("evidence", "")) - match = re.search(r"\b([PW]\d{3,})\b", evidence) - if match: - return match.group(1) - return "" +def _get_short_check_code(check_full_id: str) -> str: + """Extract short check code (e.g. P001/W004) from full check ID.""" + return check_full_id.split("#")[-1] def get_pitfalls_list(data: dict) -> list[dict]: @@ -39,7 +35,7 @@ def get_pitfalls_list(data: dict) -> list[dict]: return [ check for check in data.get("checks", []) - if _get_check_code(check).startswith("P") + if _get_short_check_code(_get_check_code(check)).startswith("P") ] @@ -48,7 +44,7 @@ def get_warnings_list(data: dict) -> list[dict]: return [ check for check in data.get("checks", []) - if _get_check_code(check).startswith("W") + if _get_short_check_code(_get_check_code(check)).startswith("W") ] @@ -71,17 +67,20 @@ def format_report(repo_url: str, data: dict) -> str: if pitfalls: report += f"## 🔴 Pitfalls ({len(pitfalls)})\n\n" for p in pitfalls: - report += f"### {p['checkId']}\n" - report += f"{p.get('process', 'No description')}\n" - report += f"{p.get('evidence', 'No details')}\n\n" + full_pitfall_id = _get_check_code(p) + short_code = _get_short_check_code(full_pitfall_id) + report += f"### [{short_code}]({full_pitfall_id})\n" + report += f"**Evidence:** {p.get('evidence', 'No details')}\n\n" if p.get("suggestion"): report += f"**Suggestion:** {p['suggestion']}\n\n" if warnings: report += f"## ⚠️ Warnings ({len(warnings)})\n\n" for w in warnings: - report += f"### {w['checkId']}\n" - report += f"{w.get('evidence', 'No details')}\n\n" + full_warning_id = _get_check_code(w) + short_code = _get_short_check_code(full_warning_id) + report += f"### [{short_code}]({full_warning_id})\n" + report += f"**Evidence:** {w.get('evidence', 'No details')}\n\n" if w.get("suggestion"): report += f"**Suggestion:** {w['suggestion']}\n\n" @@ -107,6 +106,10 @@ def format_report(repo_url: str, data: dict) -> str: At this stage, we only provide diagnostics and recommendations. In future iterations, we plan to propose automated fixes for the detected issues to further simplify the improvement process and reduce manual effort. +Each pitfall and warning is identified by a unique code (e.g. P001 for pitfalls, W004 for warnings) that corresponds to specific metadata quality issues. +You can find more details about these checks and how to address them in the [RSMetacheck catalog](https://github.com/SoftwareUnderstanding/RSMetacheck/blob/main/catalog.md). + + {report} --- diff --git a/tests/test_create_issues.py b/tests/test_create_issues.py index 3a7fd9e..8118b7d 100644 --- a/tests/test_create_issues.py +++ b/tests/test_create_issues.py @@ -75,10 +75,12 @@ def test_create_issues_cli_failed_report_contains_analysis_fields(tmp_path): "checks": [ { "checkId": "hash1", + "pitfall": "https://w3id.org/rsmetacheck/catalog/#P001", "evidence": "P001 detected: missing metadata", }, { "checkId": "hash2", + "pitfall": "https://w3id.org/rsmetacheck/catalog/#W002", "evidence": "W002 detected: missing version pin", }, ], diff --git a/tests/test_pitfalls.py b/tests/test_pitfalls.py index 1fbd2cf..0d39908 100644 --- a/tests/test_pitfalls.py +++ b/tests/test_pitfalls.py @@ -12,6 +12,7 @@ get_pitfalls_list, get_repository_url, get_warnings_list, + load_pitfalls, ) @@ -22,23 +23,23 @@ def sample_data(): "assessedSoftware": {"url": "https://github.com/example/repo"}, "checks": [ { - "checkId": "P001", + "pitfall": "https://w3id.org/rsmetacheck/catalog/#P001", "process": "Pitfall process description", "evidence": "Evidence of pitfall", "suggestion": "How to fix this", }, { - "checkId": "P002", + "pitfall": "https://w3id.org/rsmetacheck/catalog/#P002", "process": "Another pitfall", "evidence": "More evidence", }, { - "checkId": "W001", + "pitfall": "https://w3id.org/rsmetacheck/catalog/#W001", "evidence": "Warning evidence", "suggestion": "Warning suggestion", }, { - "checkId": "W002", + "pitfall": "https://w3id.org/rsmetacheck/catalog/#W002", "evidence": "Another warning", }, ], @@ -71,32 +72,35 @@ def test_get_pitfalls_list(sample_data): """Test filtering pitfalls from checks.""" pitfalls = get_pitfalls_list(sample_data) assert len(pitfalls) == 2 - assert pitfalls[0]["checkId"] == "P001" - assert pitfalls[1]["checkId"] == "P002" + assert pitfalls[0]["pitfall"].endswith("#P001") + assert pitfalls[1]["pitfall"].endswith("#P002") def test_get_warnings_list(sample_data): """Test filtering warnings from checks.""" warnings = get_warnings_list(sample_data) assert len(warnings) == 2 - assert warnings[0]["checkId"] == "W001" - assert warnings[1]["checkId"] == "W002" + assert warnings[0]["pitfall"].endswith("#W001") + assert warnings[1]["pitfall"].endswith("#W002") def test_get_lists_from_hashed_check_ids(): - """Test filtering when checkId is hashed and code is in evidence.""" + """Test filtering when checkId is hashed but pitfall URLs are present.""" data = { "checks": [ { "checkId": "694a7a7c5a16db39412fac70b6d27fbadc7222b1d8ae57ff061cc6c87e6d8edc", + "pitfall": "https://w3id.org/rsmetacheck/catalog/#P001", "evidence": "P001 detected: codemeta.json version 'unknown' does not match release version '2.2.0'", }, { "checkId": "95e131ef79871959cfd0f1ae06dd502d6c160851b0cd5b40844818858c0b22c4", + "pitfall": "https://w3id.org/rsmetacheck/catalog/#W001", "evidence": "W001 detected: pyproject.toml contains software requirements without versions.", }, { "checkId": "7c48a13e4d4ef33a608362bd2142616ca01aa2b528b457e51016034a151d058e", + "pitfall": "https://w3id.org/rsmetacheck/catalog/#W004", "evidence": "W004 detected: codemeta.json Programming languages without versions: Python", }, ] @@ -115,6 +119,35 @@ def test_get_pitfalls_list_empty(): assert pitfalls == [] +@pytest.mark.parametrize( + ("filename", "expected_pitfalls", "expected_warnings"), + [ + ("example_pitfall_1.jsonld", {"P001", "P002", "P009"}, {"W001", "W003"}), + ("example_pitfall_2.jsonld", {"P002", "P014"}, {"W003", "W004"}), + ("example_pitfall_3.jsonld", {"P001"}, {"W001", "W002", "W004"}), + ("example_pitfall_4.jsonld", {"P001", "P006"}, set()), + ("example_pitfall_5.jsonld", set(), {"W002", "W004"}), + ], +) +def test_existing_metacheck_analysis_jsonld_files( + filename, expected_pitfalls, expected_warnings +): + """Test parsing of existing metacheck analysis JSON-LD files.""" + base_path = Path(__file__).resolve().parents[1] + data = load_pitfalls( + base_path / "assets" / "existing_metacheck_analysis" / filename + ) + + pitfalls = get_pitfalls_list(data) + warnings = get_warnings_list(data) + + pitfall_codes = {item["pitfall"].split("#")[-1] for item in pitfalls} + warning_codes = {item["pitfall"].split("#")[-1] for item in warnings} + + assert pitfall_codes == expected_pitfalls + assert warning_codes == expected_warnings + + def test_format_report(sample_data): """Test report formatting.""" report = format_report("https://github.com/example/repo", sample_data) @@ -141,7 +174,12 @@ def test_format_report_no_pitfalls(): """Test report with no pitfalls.""" data = { "assessedSoftware": {"url": "https://github.com/test/repo"}, - "checks": [{"checkId": "W001", "evidence": "A warning"}], + "checks": [ + { + "pitfall": "https://w3id.org/rsmetacheck/catalog/#W001", + "evidence": "A warning", + } + ], } report = format_report("https://github.com/test/repo", data) diff --git a/uv.lock b/uv.lock index d3d8ac7..4dc93f5 100644 --- a/uv.lock +++ b/uv.lock @@ -48,16 +48,16 @@ wheels = [ [[package]] name = "babel" -version = "2.17.0" +version = "2.18.0" source = { registry = "https://pypi.org/simple" } -sdist = { url = "https://files.pythonhosted.org/packages/7d/6b/d52e42361e1aa00709585ecc30b3f9684b3ab62530771402248b1b1d6240/babel-2.17.0.tar.gz", hash = "sha256:0c54cffb19f690cdcc52a3b50bcbf71e07a808d1c80d549f2459b9d2cf0afb9d", size = 9951852 } +sdist = { url = "https://files.pythonhosted.org/packages/7d/b2/51899539b6ceeeb420d40ed3cd4b7a40519404f9baf3d4ac99dc413a834b/babel-2.18.0.tar.gz", hash = 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