details.md

output of pipeline

• stitched_image.tif Stitched image
• registered_image.tif Registered image.
• nuclei_mask.tif Nuclei mask image
• tissue_mask.tif Tissue mask image
• nuclei_mask_profile.txt Single-cell spatial gene expression profile based on nuclei mask
• cell_mask_profile.txt Single-cell spatial gene expression profile based on cell mask