ista/setup.py at master · RomanoLab/ista · GitHub

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import os
import subprocess
import sys

from setuptools import Extension, find_packages, setup
from setuptools.command.build_ext import build_ext

with open("README.md", "r", encoding="utf-8") as fp:
    readme = fp.read()

with open("VERSION", "r", encoding="utf-8") as fp:
    ista_version = fp.read().strip()


class CMakeExtension(Extension):
    def __init__(self, name, sourcedir=""):
        Extension.__init__(self, name, sources=[])
        self.sourcedir = os.path.abspath(sourcedir)


class CMakeBuild(build_ext):
    def run(self):
        try:
            subprocess.check_output(["cmake", "--version"])
        except OSError:
            raise RuntimeError("CMake must be installed to build C++ extensions")

        for ext in self.extensions:
            self.build_extension(ext)

    def build_extension(self, ext):
        extdir = os.path.abspath(os.path.dirname(self.get_ext_fullpath(ext.name)))

        # Create build directory
        if not os.path.exists(self.build_temp):
            os.makedirs(self.build_temp)

        cmake_args = [
            f"-DCMAKE_LIBRARY_OUTPUT_DIRECTORY={extdir}",
            f"-DPYTHON_EXECUTABLE={sys.executable}",
            "-DBUILD_PYTHON_BINDINGS=ON",
            "-DBUILD_GUI=OFF",
        ]

        cfg = "Debug" if self.debug else "Release"
        build_args = ["--config", cfg]

        if sys.platform.startswith("win"):
            cmake_args += [f"-DCMAKE_LIBRARY_OUTPUT_DIRECTORY_{cfg.upper()}={extdir}"]
            build_args += ["--", "/m"]
        else:
            cmake_args += [f"-DCMAKE_BUILD_TYPE={cfg}"]
            build_args += ["--", "-j2"]

        env = os.environ.copy()
        env["CXXFLAGS"] = (
            f'{env.get("CXXFLAGS", "")} -DVERSION_INFO="{self.distribution.get_version()}"'
        )

        subprocess.check_call(
            ["cmake", ext.sourcedir] + cmake_args, cwd=self.build_temp, env=env
        )
        subprocess.check_call(
            ["cmake", "--build", ".", "--target", "_libista_owl2"] + build_args,
            cwd=self.build_temp,
        )


setup(
    name="ista",
    version=ista_version,
    author="Joseph D. Romano",
    description="A Python/C++ toolkit for building and manipulating knowledge graphs.",
    long_description=readme,
    long_description_content_type="text/markdown",
    url="https://github.com/JDRomano2/ista",
    packages=find_packages(),
    python_requires=">=3.7",
    install_requires=[
        "openpyxl",
        "pandas",
        "tqdm",
        "pybind11>=2.6.0",
    ],
    extras_require={
        "mysql": ["mysqlclient"],
        "neo4j": ["neo4j"],
        "graph": ["networkx"],
        "dev": ["pytest", "sphinx"],
    },
    ext_modules=[CMakeExtension("_libista_owl2", sourcedir=".")],
    cmdclass={"build_ext": CMakeBuild},
    entry_points={
        "console_scripts": [
            "ista_populate=ista.populate:main",
            "owl2memgraph=ista.owl2memgraph:main",
        ]
    },
    classifiers=[
        "Development Status :: 3 - Alpha",
        "Intended Audience :: Science/Research",
        "Topic :: Scientific/Engineering :: Bio-Informatics",
        "Programming Language :: Python :: 3",
        "Programming Language :: Python :: 3.7",
        "Programming Language :: Python :: 3.8",
        "Programming Language :: Python :: 3.9",
        "Programming Language :: Python :: 3.10",
        "Programming Language :: C++",
    ],
    zip_safe=False,
)