NGSEPplugin/plugin.xml at master · NGSEP/NGSEPplugin · GitHub

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<?xml version="1.0" encoding="UTF-8"?>
<?eclipse version="3.4"?>
<plugin>
<extension point="org.eclipse.core.expressions.definitions">
	<definition id="net.sf.ngsep.SingleVCFEnablement">
		<with variable="activeMenuSelection">
			<count value="1"/>
			<iterate ifEmpty="false" operator="or">
				<adapt type="org.eclipse.core.resources.IFile">
					<or>
						<test property="org.eclipse.core.resources.extension" value="vcf" />
						<test property="org.eclipse.core.resources.extension" value="VCF" />
						<test property="org.eclipse.core.resources.extension" value="gz" />
					</or>
				</adapt>
			</iterate>
		</with>
	</definition>
	<definition id="net.sf.ngsep.SingleBAMEnablement">
		<with variable="activeMenuSelection">
			<count value="1"/>
			<iterate ifEmpty="false" operator="or">
				<adapt type="org.eclipse.core.resources.IFile">
					<or>
						<test property="org.eclipse.core.resources.extension" value="bam" />
						<test property="org.eclipse.core.resources.extension" value="BAM" />
					</or>
				</adapt>
			</iterate>
		</with>
	</definition>
	<definition id="net.sf.ngsep.SingleGFFEnablement">
		<with variable="activeMenuSelection">
			<count value="1"/>
			<iterate ifEmpty="false" operator="or">
				<adapt type="org.eclipse.core.resources.IFile">
					<or>
						<test property="org.eclipse.core.resources.extension" value="gff" />
						<test property="org.eclipse.core.resources.extension" value="GFF" />
						<test property="org.eclipse.core.resources.extension" value="gff3" />
						<test property="org.eclipse.core.resources.extension" value="GFF3" />
					</or>
				</adapt>
			</iterate>
		</with>
	</definition>
	<definition id="net.sf.ngsep.FolderEnablement">
		<with variable="activeMenuSelection">
			<iterate ifEmpty="false" operator="or">
				<adapt type="org.eclipse.core.resources.IFolder">
				</adapt>
			</iterate>
		</with>
	</definition>
	<definition id="net.sf.ngsep.SingleFastaEnablement">
		<with variable="activeMenuSelection">
			<count value="1"/>
			<iterate ifEmpty="false" operator="or">
				<adapt type="org.eclipse.core.resources.IFile">
					<or>
						<test property="org.eclipse.core.resources.extension" value="fa" />
						<test property="org.eclipse.core.resources.extension" value="fasta" />
						<test property="org.eclipse.core.resources.extension" value="fna" />
						<test property="org.eclipse.core.resources.extension" value="mfa" />
						<test property="org.eclipse.core.resources.extension" value="FA" />
						<test property="org.eclipse.core.resources.extension" value="FASTA" />
               			<test property="org.eclipse.core.resources.extension" value="FNA" />
               			<test property="org.eclipse.core.resources.extension" value="MFA" />
					</or>
				</adapt>
			</iterate>
		</with>
	</definition>
	<definition id="net.sf.ngsep.SingleTextFileEnablement">
		<with variable="activeMenuSelection">
			<count value="1"/>
			<iterate ifEmpty="false" operator="or">
				<adapt type="org.eclipse.core.resources.IFile">
					<not>
						<test property="org.eclipse.core.resources.extension" value="fa" />
					</not>
					<not>
						<test property="org.eclipse.core.resources.extension" value="fasta" />
					</not>
					<not>
						<test property="org.eclipse.core.resources.extension" value="fq" />
					</not>
					<not>
						<test property="org.eclipse.core.resources.extension" value="fastq" />
					</not>
					<not>
						<test property="org.eclipse.core.resources.extension" value="gz" />
					</not>
					<not>
						<test property="org.eclipse.core.resources.extension" value="FA" />
					</not>
					<not>
						<test property="org.eclipse.core.resources.extension" value="FASTA" />
					</not>
					<not>
						<test property="org.eclipse.core.resources.extension" value="FQ" />
					</not>
					<not>
						<test property="org.eclipse.core.resources.extension" value="FASTQ" />
					</not>

					<not>
						<test property="org.eclipse.core.resources.extension" value="bam" />
					</not>
					<not>
						<test property="org.eclipse.core.resources.extension" value="bai" />
					</not>
					<not>
						<test property="org.eclipse.core.resources.extension" value="sam" />
					</not>
					<not>
						<test property="org.eclipse.core.resources.extension" value="vcf" />
					</not>
					<not>
						<test property="org.eclipse.core.resources.extension" value="log" />
					</not>
					<not>
						<test property="org.eclipse.core.resources.extension" value="png" />
					</not>
					<not>
						<test property="org.eclipse.core.resources.extension" value="ini" />
					</not>
					<not>
						<test property="org.eclipse.core.resources.extension" value="properties" />
					</not>
				</adapt>
			</iterate>
		</with>
	</definition>
 </extension>
<extension point="org.eclipse.ui.menus">
	<menuContribution locationURI="popup:org.eclipse.jdt.ui.PackageExplorer">
		<menu id="NGSEP" label="NGSEP Menu">
			<command commandId="net.sf.ngsep.view.MainIndexBowtie" label="Create Index Bowtie2" style="push">
				<visibleWhen checkEnabled="false">
					<reference definitionId="net.sf.ngsep.SingleFastaEnablement"/>
				</visibleWhen>
			</command>
			<command commandId="MapReads" label="Map Reads" style="push">
				<visibleWhen checkEnabled="false">
					<with variable="activeMenuSelection">
						<or>
							<count value="1"/>
							<count value="2"/>
						</or>
						<iterate ifEmpty="false" operator="or">
							<adapt type="org.eclipse.core.resources.IFile">
								<or>
									<test property="org.eclipse.core.resources.extension" value="fq" />
									<test property="org.eclipse.core.resources.extension" value="fastq" />
									<test property="org.eclipse.core.resources.extension" value="fa" />
									<test property="org.eclipse.core.resources.extension" value="fasta" />
									<test property="org.eclipse.core.resources.extension" value="txt" />
									<test property="org.eclipse.core.resources.extension" value="fna" />
									<test property="org.eclipse.core.resources.extension" value="mfa" />
									<test property="org.eclipse.core.resources.extension" value="FQ" />
									<test property="org.eclipse.core.resources.extension" value="FASTQ" />
									<test property="org.eclipse.core.resources.extension" value="FA" />
									<test property="org.eclipse.core.resources.extension" value="FASTA" />
									<test property="org.eclipse.core.resources.extension" value="TXT" />
									<test property="org.eclipse.core.resources.extension" value="FNA" />
									<test property="org.eclipse.core.resources.extension" value="MFA" />
									<test property="org.eclipse.core.resources.extension" value="gz" />
								</or>
							</adapt>
						</iterate>
					</with>
				</visibleWhen>
			</command>
			<command commandId="net.sf.ngsep.view.MainSortAlignment" label="Sort Alignments" style="push">
				<visibleWhen checkEnabled="false">
					<reference definitionId="net.sf.ngsep.SingleBAMEnablement"/>
				</visibleWhen>
			</command>
			<command commandId="WizardSingleEnd" label="Wizard Single End" style="push">
				<visibleWhen checkEnabled="false">
					<reference definitionId="net.sf.ngsep.FolderEnablement"/>
				</visibleWhen>
			</command>
			<command commandId="WizardPairedEnd" label="Wizard Paired End" style="push">
				<visibleWhen checkEnabled="false">
					<reference definitionId="net.sf.ngsep.FolderEnablement"/>
				</visibleWhen>
			</command>
			<command commandId="net.sf.ngsep.view.MainMultiMapping" label="Multi Mapping Single End" style="push">
				<visibleWhen checkEnabled="false">
					<reference definitionId="net.sf.ngsep.FolderEnablement"/>
				</visibleWhen>
			</command>
			<command commandId="net.sf.ngsep.view.MainMultiMappingPairedEnd" label="Multi Mapping Paired End" style="push">
				<visibleWhen checkEnabled="false">
					<reference definitionId="net.sf.ngsep.FolderEnablement"/>
				</visibleWhen>
			</command>

			<command commandId="net.sf.ngsep.view.MainBasePairQualityStatistics" label="Calculate Quality Statistics" style="push">
				<visibleWhen checkEnabled="false">
					<reference definitionId="net.sf.ngsep.SingleBAMEnablement"/>
				</visibleWhen>
			</command>
			<command commandId="net.sf.ngsep.view.MainPlotQualityStatistics" label="Plot Quality Statistics" style="push">
				<visibleWhen checkEnabled="false">
					<reference definitionId="net.sf.ngsep.SingleTextFileEnablement"/>
				</visibleWhen>
			</command>
			<command commandId="net.sf.ngsep.view.MainCoverageStatisticsCalculator" label="Calculate Coverage Statistics" style="push">
				<visibleWhen checkEnabled="false">
					<reference definitionId="net.sf.ngsep.SingleBAMEnablement"/>
				</visibleWhen>
			</command>
			<command commandId="net.sf.ngsep.view.MainPlotCoverageStatistics" label="Plot Coverage Statistics" style="push">
				<visibleWhen checkEnabled="false">
					<reference definitionId="net.sf.ngsep.SingleTextFileEnablement"/>
				</visibleWhen>
			</command>
			<command commandId="net.sf.ngsep.view.MainRelativeAlleleCountsCalculator" label="Calculate Relative Allele Counts" style="push">
				<visibleWhen checkEnabled="false">
					<reference definitionId="net.sf.ngsep.SingleBAMEnablement"/>
				</visibleWhen>
			</command>
			<command commandId="net.sf.ngsep.view.MainVariantsDetector" label="Find Variants" style="push">
				<visibleWhen checkEnabled="false">
					<reference definitionId="net.sf.ngsep.SingleBAMEnablement"/>
				</visibleWhen>
			</command>
			<command commandId="net.sf.ngsep.view.MainMultiVariantsDetector" label="Multi Variants Detector" style="push">
				<visibleWhen checkEnabled="false">
					<reference definitionId="net.sf.ngsep.FolderEnablement"/>
				</visibleWhen>
			</command>
			<command commandId="net.sf.ngsep.view.MainMergeVCF" label="Merge VCF" style="push">
				<visibleWhen checkEnabled="false">
					<reference definitionId="net.sf.ngsep.FolderEnablement"/>
				</visibleWhen>
			</command>
			<command commandId="net.sf.ngsep.view.MainVCFFunctionalAnnotator" label="Variants Functional Annotation" style="push">
				<visibleWhen checkEnabled="false">
					<reference definitionId="net.sf.ngsep.SingleVCFEnablement"/>
				</visibleWhen>
			</command>
			<command commandId="net.sf.ngsep.view.MainVCFFilter" label="VCF Filter" style="push">
				<visibleWhen checkEnabled="false">
					<reference definitionId="net.sf.ngsep.SingleVCFEnablement"/>
				</visibleWhen>
			</command>
			<command commandId="net.sf.ngsep.view.MainVCFConverter" label="VCF Converter" style="push">
				<visibleWhen checkEnabled="false">
					<reference definitionId="net.sf.ngsep.SingleVCFEnablement"/>
				</visibleWhen>
			</command>
			<command commandId="net.sf.ngsep.view.MainVCFSummaryStatistics" label="VCF Summary Statistics" style="push">
				<visibleWhen checkEnabled="false">
					<reference definitionId="net.sf.ngsep.SingleVCFEnablement"/>
				</visibleWhen>
			</command>
			<command commandId="net.sf.ngsep.view.MainPlotVCFSummaryStatistics" label="Plot VCF Summary Statistics" style="push">
				<visibleWhen checkEnabled="false">
					<reference definitionId="net.sf.ngsep.SingleTextFileEnablement"/>
				</visibleWhen>
			</command>
			<command commandId="net.sf.ngsep.view.MainVCFDiversityCalculator" label="VCF Diversity Calculator" style="push">
				<visibleWhen checkEnabled="false">
					<reference definitionId="net.sf.ngsep.SingleVCFEnablement"/>
				</visibleWhen>
			</command>
			<command commandId="net.sf.ngsep.view.MainAlleleSharingStatistics" label="Allele Sharing Statistics" style="push">
				<visibleWhen checkEnabled="false">
					<reference definitionId="net.sf.ngsep.SingleVCFEnablement"/>
				</visibleWhen>
			</command>
			<command commandId="net.sf.ngsep.view.MainVCFComparator" label="VCF Comparator" style="push">
				<visibleWhen checkEnabled="false">
					<reference definitionId="net.sf.ngsep.SingleVCFEnablement"/>
				</visibleWhen>
			</command>
			<command commandId="net.sf.ngsep.view.MainImputeGenotype" label="Genotype imputation" style="push">
				<visibleWhen checkEnabled="false">
					<reference definitionId="net.sf.ngsep.SingleVCFEnablement"/>
				</visibleWhen>
			</command>
			<command commandId="net.sf.ngsep.view.MainVCFIntrogressionAnalysis" label="Introgression Analysis" style="push">
				<visibleWhen checkEnabled="false">
					<reference definitionId="net.sf.ngsep.SingleVCFEnablement"/>
				</visibleWhen>
			</command>
			<command commandId="net.sf.ngsep.view.MainReadsDemultiplex" label="Reads Demultiplex" style="push">
				<visibleWhen checkEnabled="false">
					<reference definitionId="net.sf.ngsep.SingleTextFileEnablement"/>
				</visibleWhen>
			</command>
			<command commandId="ReadDepthComparator" label="Read Depth Comparator" style="push">
				<visibleWhen checkEnabled="false">
					<with variable="activeMenuSelection">
						<count value="2"/>
						<iterate ifEmpty="false" operator="or">
							<adapt type="org.eclipse.core.resources.IFile">
								<or>
									<test property="org.eclipse.core.resources.extension" value="bam" />
									<test property="org.eclipse.core.resources.extension" value="BAM" />
								</or>
							</adapt>
						</iterate>
					</with>
				</visibleWhen>
			</command>
			<command commandId="net.sf.ngsep.view.MainKmersCounter" label="Kmers Counter" style="push">
				<visibleWhen checkEnabled="false">
					<with variable="activeMenuSelection">
						<count value="1"/>
						<iterate ifEmpty="false" operator="or">
							<adapt type="org.eclipse.core.resources.IFile">
								<or>
									<test property="org.eclipse.core.resources.extension" value="fq" />
									<test property="org.eclipse.core.resources.extension" value="fastq" />
									<test property="org.eclipse.core.resources.extension" value="fa" />
									<test property="org.eclipse.core.resources.extension" value="fasta" />
									<test property="org.eclipse.core.resources.extension" value="txt" />
									<test property="org.eclipse.core.resources.extension" value="fna" />
									<test property="org.eclipse.core.resources.extension" value="mfa" />
									<test property="org.eclipse.core.resources.extension" value="FQ" />
									<test property="org.eclipse.core.resources.extension" value="FASTQ" />
									<test property="org.eclipse.core.resources.extension" value="FA" />
									<test property="org.eclipse.core.resources.extension" value="FASTA" />
									<test property="org.eclipse.core.resources.extension" value="TXT" />
									<test property="org.eclipse.core.resources.extension" value="FNA" />
									<test property="org.eclipse.core.resources.extension" value="MFA" />
									<test property="org.eclipse.core.resources.extension" value="gz" />
								</or>
							</adapt>
						</iterate>
					</with>
				</visibleWhen>
			</command>
			<command commandId="net.sf.ngsep.view.MainDistanceMatrixCalculator" label="Distance Matrix Calculator" style="push">
				<visibleWhen checkEnabled="false">
					<reference definitionId="net.sf.ngsep.SingleVCFEnablement"/>
				</visibleWhen>
			</command>
			<command commandId="net.sf.ngsep.view.MainNeighborJoining" label="Neighbor Joining Generator" style="push">
 				<visibleWhen checkEnabled="false">
					<reference definitionId="net.sf.ngsep.SingleTextFileEnablement"/>
				</visibleWhen>
			</command>
			<command commandId="net.sf.ngsep.view.MainSingleIndividualSimulator" label="Single Individual Simulator" style="push">
				<visibleWhen checkEnabled="false">
					<reference definitionId="net.sf.ngsep.SingleFastaEnablement"/>
				</visibleWhen>
			</command>
			<command commandId="net.sf.ngsep.view.MainGenomesAligner" label="Genomes Aligner" style="push">
				<visibleWhen checkEnabled="false">
					<reference definitionId="net.sf.ngsep.SingleFastaEnablement"/>
				</visibleWhen>
			</command>
			<command commandId="net.sf.ngsep.view.MainVCFIndividualGenomeBuilder" label="Individual Genome Builder" style="push">
				<visibleWhen checkEnabled="false">
					<reference definitionId="net.sf.ngsep.SingleVCFEnablement"/>
				</visibleWhen>
			</command>
			<command commandId="net.sf.ngsep.view.MainVCFGoldStandardComparator" label="VCF Gold Standard Comparator" style="push">
				<visibleWhen checkEnabled="false">
					<reference definitionId="net.sf.ngsep.SingleVCFEnablement"/>
				</visibleWhen>
			</command>
			<command commandId="net.sf.ngsep.view.MainVCFVariantDensityCalculator" label="VCF Variant Density Calculator" style="push">
				<visibleWhen checkEnabled="false">
					<reference definitionId="net.sf.ngsep.SingleVCFEnablement"/>
				</visibleWhen>
			</command>
			<command commandId="net.sf.ngsep.view.MainTranscriptomeAnalyzer" label="Transcriptome Analizer" style="push">
				<visibleWhen checkEnabled="false">
					<reference definitionId="net.sf.ngsep.SingleGFFEnablement"/>
				</visibleWhen>
			</command>
<!--         <command commandId="net.sf.ngsep.view.MainMutatedPeptidesExtractor" label="Mutated Peptides Extractor" style="push">
				<visibleWhen checkEnabled="false">
					<reference definitionId="net.sf.ngsep.SingleVCFEnablement"/>
				</visibleWhen>
			</command>
-->
         </menu>
      </menuContribution>
</extension>
<extension point="org.eclipse.ui.commands">
      <command id="net.sf.ngsep.view.MainIndexBowtie" name="Create Index Bowtie2" defaultHandler="net.sf.ngsep.control.PlugSingleFile"/>
      <command id="MapReads" name="Map reads" defaultHandler="net.sf.ngsep.control.PlugMapRead"/>
      <command id="net.sf.ngsep.view.MainSortAlignment" name="Sort Aligments" defaultHandler="net.sf.ngsep.control.PlugSingleFile"/>
      <command id="WizardSingleEnd" name="Wizard Single End" defaultHandler="net.sf.ngsep.control.PlugWizardSingleEndReads"/>
      <command id="WizardPairedEnd" name="Wizard Paired End" defaultHandler="net.sf.ngsep.control.PlugWizardPairedEndReads"/>
      <command id="net.sf.ngsep.view.MainMultiMapping" name="Multi Mapping Single End" defaultHandler="net.sf.ngsep.control.PlugMultipleFiles"/>
      <command id="net.sf.ngsep.view.MainMultiMappingPairedEnd" name="Multi Mapping Paired End" defaultHandler="net.sf.ngsep.control.PlugMultipleFiles"/>
      <command id="net.sf.ngsep.view.MainBasePairQualityStatistics" name="Calculate Basepair Quality Statistics" defaultHandler="net.sf.ngsep.control.PlugSingleFile"/>
      <command id="net.sf.ngsep.view.MainPlotQualityStatistics" name="Plot Quality Statistics" defaultHandler="net.sf.ngsep.control.PlugSingleFile"/>
      <command id="net.sf.ngsep.view.MainCoverageStatisticsCalculator" name="Calculate Coverage Statistics" defaultHandler="net.sf.ngsep.control.PlugSingleFile"/>
      <command id="net.sf.ngsep.view.MainPlotCoverageStatistics" name="Plot Coverage Statistics" defaultHandler="net.sf.ngsep.control.PlugSingleFile"/>
      <command id="net.sf.ngsep.view.MainRelativeAlleleCountsCalculator" name="Calculate Relative Allele Counts" defaultHandler="net.sf.ngsep.control.PlugSingleFile"/>
      <command id="net.sf.ngsep.view.MainVariantsDetector" name="Variants Detector" defaultHandler="net.sf.ngsep.control.PlugSingleFile"/>
      <command id="net.sf.ngsep.view.MainMultiVariantsDetector" name="Multi Variants Detector" defaultHandler="net.sf.ngsep.control.PlugMultipleFiles"/>
      <command id="net.sf.ngsep.view.MainMergeVCF" name="Merge VCF" defaultHandler="net.sf.ngsep.control.PlugMultipleFiles"/>
      <command id="net.sf.ngsep.view.MainVCFFunctionalAnnotator" name="Variants Functional Annotator" defaultHandler="net.sf.ngsep.control.PlugSingleFile"/>
      <command id="net.sf.ngsep.view.MainVCFFilter" name="VCF Filter" defaultHandler="net.sf.ngsep.control.PlugSingleFile"/>
      <command id="net.sf.ngsep.view.MainVCFConverter" name="VCF Converter" defaultHandler="net.sf.ngsep.control.PlugSingleFile"/>
      <command id="net.sf.ngsep.view.MainVCFSummaryStatistics" name="VCF Summary Statistics" defaultHandler="net.sf.ngsep.control.PlugSingleFile"/>
      <command id="net.sf.ngsep.view.MainPlotVCFSummaryStatistics" name="Plot VCF Summary Statistics" defaultHandler="net.sf.ngsep.control.PlugSingleFile"/>
      <command id="net.sf.ngsep.view.MainVCFDiversityCalculator" name="VCF Diversity Calculator" defaultHandler="net.sf.ngsep.control.PlugSingleFile"/>
      <command id="net.sf.ngsep.view.MainAlleleSharingStatistics" name="Allele Sharing Statistics" defaultHandler="net.sf.ngsep.control.PlugSingleFile"/>
      <command id="net.sf.ngsep.view.MainVCFComparator" name="VCF Comparator" defaultHandler="net.sf.ngsep.control.PlugSingleFile"/>
      <command id="net.sf.ngsep.view.MainImputeGenotype" name="Genotype imputation" defaultHandler="net.sf.ngsep.control.PlugSingleFile"/>
      <command id="net.sf.ngsep.view.MainVCFIntrogressionAnalysis" name="Introgression Analysis" defaultHandler="net.sf.ngsep.control.PlugSingleFile"/>
      <command id="net.sf.ngsep.view.MainReadsDemultiplex" name="Reads Demultiplex" defaultHandler="net.sf.ngsep.control.PlugSingleFile"/>
      <command id="ReadDepthComparator" name="Read Depth Comparator" defaultHandler="net.sf.ngsep.control.PlugCNVcompare"/>
      <command id="net.sf.ngsep.view.MainKmersCounter" name="Kmers Counter" defaultHandler="net.sf.ngsep.control.PlugSingleFile"/>
      <command id="net.sf.ngsep.view.MainDistanceMatrixCalculator" name="Distance Matrix Calculator" defaultHandler="net.sf.ngsep.control.PlugSingleFile"/>
 	  <command id="net.sf.ngsep.view.MainNeighborJoining" name="Neighbor Joining Generation" defaultHandler="net.sf.ngsep.control.PlugSingleFile"/>
 	  <command id="net.sf.ngsep.view.MainSingleIndividualSimulator" name="Single Individual Simulator" defaultHandler="net.sf.ngsep.control.PlugSingleFile"/>
 	  <command id="net.sf.ngsep.view.MainGenomesAligner" name="Genomes Aligner" defaultHandler="net.sf.ngsep.control.PlugSingleFile"/>
 	  <command id="net.sf.ngsep.view.MainVCFIndividualGenomeBuilder" name="Individual Genome Builder" defaultHandler="net.sf.ngsep.control.PlugSingleFile"/>
      <command id="net.sf.ngsep.view.MainVCFGoldStandardComparator" name="VCF Gold Standard Comparator" defaultHandler="net.sf.ngsep.control.PlugSingleFile"/>
      <command id="net.sf.ngsep.view.MainVCFVariantDensityCalculator" name="VCF Variant Density Calculator" defaultHandler="net.sf.ngsep.control.PlugSingleFile"/>
      <command id="net.sf.ngsep.view.MainTranscriptomeAnalyzer" name="Transcriptome Analizer" defaultHandler="net.sf.ngsep.control.PlugSingleFile"/>
<!-- 	  <command id="net.sf.ngsep.view.MainMutatedPeptidesExtractor" name="Mutated Peptides Extractor" defaultHandler="net.sf.ngsep.control.PlugSingleFile"/>
-->
</extension>
<extension point="org.eclipse.ui.views">
	<view
		name="NGSEPView"
		icon="icons/ProgreesBarLogger.gif"
		category="org.eclipse.ui"
		class="org.eclipse.ui.ExtensionFactory:progressView"
		id="org.eclipse.ui.views.ProgressViewProcess">
	</view>
</extension>
<extension point="org.eclipse.ui.editors">
   <editor class="net.sf.ngsep.view.SimpleSAMBrowseEditor"
         default="true"
         extensions="bam,sam"
         icon="icons/sample.gif"
         id="SimpleBAMBrowse"
         name="Simple BAM Browse">
   </editor>
  <editor class="net.sf.ngsep.view.SimpleVCFBrowseEditor"
        default="true"
        extensions="vcf"
        icon="icons/sample.gif"
        id="SimpleVCFBrowse"
        name="Simple VCF Browse">
  </editor>
</extension>
</plugin>