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MultiboxCA.f
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1431 lines (1304 loc) · 42 KB
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program boxAW
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
c ocean-atmosphere biogeochemistry box model
c
c five boxes: atmosphere
c ocean: high lat surface
c ocean: low lat surface
c ocean: deep
c ocean: shelf: CAN ADAPT TO SUBTROP THERMOCLINE
c
c
c CARRYING OCEAN PO4
c
c
c Dec 6 2001
c ADD CARBON....
c
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
c Mick Follows, Dec 2001
c ADAPTED FROM
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
c
c
c
c ------------------------------------------------
c | |
c | |
c | |
c | ATMOSPHERE |
c | |
c | |
c | |
c |-----------------------------------------------|
c |||||| | | |
c |||||| | | |
c |||||| SHELF | LOW LAT | HIGH LAT |
c |||||| | SURFACE | SURFACE |
c |||||| | | |
c |||||| | | |
c |||||| --------------------------------|
c |||||| | |
c |||||| | |
c |||||| | |
c |||||| | |
c |||||| | |
c ||||||----------| DEEP OCEAN |
c ||||||||||||||||| |
c ||||||||||||||||| |
c ||||||||||||||||| |
c ||||||||||||||||| |
c ||||||||||||||||| |
c ||||||||||||||||| |
c ||||||||||||||||| |
c ||||||||||||||||| |
c ||||||||||||||||| |
c ||||||||||||||||| |
c ||||||||||||||||| |
c ------------------------------------------------
c
c
c
c
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
implicit none
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
c declare variables
C QUITE A FEW REDUNDANT HERE AT PRESENT....
cccccccccccccccccccccccccccccccccccccccccccccccccccccccc
INTEGER nstep
INTEGER nstepmax
REAL*8 dt
REAL*8 time
REAL*8 dx
REAL*8 dy_h
REAL*8 dy_l
REAL*8 dy_d
REAL*8 dy_s
REAL*8 dz_l
REAL*8 dz_h
REAL*8 dz_d
REAL*8 dz_s
REAL*8 tot_atmos_n2
REAL*8 tot_atmos_o2
REAL*8 tot_atmos_co2
REAL*8 atmos_po2
REAL*8 atmos_pco2
REAL*8 col_mass_n2
REAL*8 pc_l
REAL*8 pc_h
REAL*8 pc_d
REAL*8 pc_s
REAL*8 pn_l
REAL*8 pn_h
REAL*8 pn_d
REAL*8 pn_s
REAL*8 dc_l
REAL*8 dc_h
REAL*8 dc_d
REAL*8 dc_s
REAL*8 dn_l
REAL*8 dn_h
REAL*8 dn_d
REAL*8 dn_s
REAL*8 da_l
REAL*8 da_h
REAL*8 da_d
REAL*8 da_s
REAL*8 po4_l
REAL*8 po4_h
REAL*8 po4_d
REAL*8 po4_s
REAL*8 dic_l
REAL*8 dic_h
REAL*8 dic_d
REAL*8 dic_s
REAL*8 alk_l
REAL*8 alk_h
REAL*8 alk_d
REAL*8 alk_s
REAL*8 m_hd
REAL*8 m_ld
REAL*8 m_lh
REAL*8 m_ds
REAL*8 q
REAL*8 rho_ref
REAL*8 z_remin
REAL*8 RA
REAL*8 RC
REAL*8 Vp_h
REAL*8 Vp_l
REAL*8 Vp_s
REAL*8 vol_h
REAL*8 vol_l
REAL*8 vol_d
REAL*8 vol_s
REAL*8 dpcdt_h
REAL*8 dpcdt_l
REAL*8 dpcdt_d
REAL*8 dpcdt_s
REAL*8 dpndt_h
REAL*8 dpndt_l
REAL*8 dpndt_d
REAL*8 dpndt_s
REAL*8 ddcdt_h
REAL*8 ddcdt_l
REAL*8 ddcdt_d
REAL*8 ddcdt_s
REAL*8 ddndt_h
REAL*8 ddndt_l
REAL*8 ddndt_d
REAL*8 ddndt_s
REAL*8 ddadt_h
REAL*8 ddadt_l
REAL*8 ddadt_d
REAL*8 ddadt_s
REAL*8 dpo4dt_h
REAL*8 dpo4dt_l
REAL*8 dpo4dt_d
REAL*8 dpo4dt_s
REAL*8 dalkdt_h
REAL*8 dalkdt_l
REAL*8 dalkdt_d
REAL*8 dalkdt_s
REAL*8 ddicdt_h
REAL*8 ddicdt_l
REAL*8 ddicdt_d
REAL*8 ddicdt_s
REAL*8 TotalP
REAL*8 TotalN
c T,S
REAL*8 t_l
REAL*8 t_h
REAL*8 t_d
REAL*8 t_s
REAL*8 s_l
REAL*8 s_h
REAL*8 s_d
REAL*8 s_s
c atmosphere
REAL*8 atmos_moles_N2
REAL*8 atmos_moles_O2
c limiting nutrient
REAL*8 mumpc
REAL*8 mumpn
REAL*8 kpo4pc
REAL*8 kpo4pn
REAL*8 kca
c N2 fixation/nitrification/denitrification
REAL*8 hc
REAL*8 hn
REAL*8 rem
REAL*8 remA
REAL*8 lambda_dc
REAL*8 lambda_dn
REAL*8 lambda_da
c mixed layer regeneration and sinking of biomass
REAL*8 Ipo_h
REAL*8 Ipo_l
REAL*8 Ipo_s
REAL*8 Ia_h
REAL*8 Ia_l
REAL*8 Ia_s
REAL*8 Ic_h
REAL*8 Ic_l
REAL*8 Ic_s
REAL*8 omega
REAL*8 amp
REAL*8 mmpc
c dummy variable
REAL*8 alln
REAL*8 testratio
c variable controlling anoxic fraction
REAL*8 p_frac_buried
REAL*8 a_frac_buried
REAL*8 afb0
REAL*8 zstar
REAL*8 write_years
REAL*8 p_frac_buried_shelf
REAL*8 a_frac_buried_shelf
REAL*8 np_burial
REAL*8 m_ls
REAL*8 k_denit_o2
REAL*8 kcomp
REAL*8 ca_sat
C SOME PARAMETERS NOT READ IN, BUT SET BELOW..............
INTEGER npar
INTEGER nvalues
PARAMETER(npar=50)
PARAMETER(nvalues=42)
INTEGER idummy
INTEGER iout
INTEGER iout2
INTEGER iend
INTEGER nwrite
REAL*8 parm(npar)
REAL*8 x(nvalues)
REAL*8 y(nvalues)
REAL*8 dthold
REAL*8 tstepfactor
REAL*8 lambda_high
REAL*8 lambda_low
REAL*8 lambda_shelf
REAL*8 export_s
CMICK.... variables for adams-bashforth timestepping
CMICK - NOW REDUNDANT, A-B SCHEME NOT USED
REAL*8 epsilon
REAL*8 dpcdt_h_o
REAL*8 dpcdt_l_o
REAL*8 dpcdt_d_o
REAL*8 dpcdt_s_o
REAL*8 dpndt_h_o
REAL*8 dpndt_l_o
REAL*8 dpndt_d_o
REAL*8 dpndt_s_o
REAL*8 ddcdt_h_o
REAL*8 ddcdt_l_o
REAL*8 ddcdt_d_o
REAL*8 ddcdt_s_o
REAL*8 ddndt_h_o
REAL*8 ddndt_l_o
REAL*8 ddndt_d_o
REAL*8 ddndt_s_o
REAL*8 ddadt_h_o
REAL*8 ddadt_l_o
REAL*8 ddadt_d_o
REAL*8 ddadt_s_o
REAL*8 dpo4dt_h_o
REAL*8 dpo4dt_l_o
REAL*8 dpo4dt_d_o
REAL*8 dpo4dt_s_o
REAL*8 ab0
REAL*8 ab1
REAL*8 DICtot
REAL*8 ALKtot
INTEGER i_timestep
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
REAL*8 dalkdt_h_o
REAL*8 dalkdt_l_o
REAL*8 dalkdt_d_o
REAL*8 dalkdt_s_o
REAL*8 ddicdt_h_o
REAL*8 ddicdt_l_o
REAL*8 ddicdt_d_o
REAL*8 ddicdt_s_o
REAL*8 airseafluxCO2
REAL*8 co2flux
REAL*8 pf_l
REAL*8 pf_s
REAL*8 pf_h
REAL*8 atmos_moles_CO2
REAL*8 ca_l
REAL*8 ca_h
REAL*8 ca_s
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
C...........................................
C SOME WORKING VARIABLES NOT PASSED IN FROM INPUT FILE
REAL*8 offset
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
c read in file of default/initial values
open(10,file='inparam.dat',status='old')
do idummy = 1, npar
read(10,*)parm(idummy)
end do
open(11,file='invalues.dat',status='old')
do idummy = 1, nvalues
read(11,*)x(idummy)
end do
c how often to write out?
c write_years = 500.
c open output file
iout=18
open(iout,file='time_boxAW.dat',status='new')
iend=19
open(iend,file='output_boxAW.dat',status='new')
iout2=20
open(iout2,file='time_boxAW2.dat',status='new')
c initialise some timestepping variables
dpcdt_h_o = 0.0
dpcdt_l_o = 0.0
dpcdt_d_o = 0.0
dpcdt_s_o = 0.0
dpndt_h_o = 0.0
dpndt_l_o = 0.0
dpndt_d_o = 0.0
dpndt_s_o = 0.0
ddcdt_h_o = 0.0
ddcdt_l_o = 0.0
ddcdt_d_o = 0.0
ddcdt_s_o = 0.0
ddndt_h_o = 0.0
ddndt_l_o = 0.0
ddndt_d_o = 0.0
ddndt_s_o = 0.0
ddadt_h_o = 0.0
ddadt_l_o = 0.0
ddadt_d_o = 0.0
ddadt_s_o = 0.0
dpo4dt_h_o = 0.0
dpo4dt_l_o = 0.0
dpo4dt_d_o = 0.0
dpo4dt_s_o = 0.0
epsilon = 0.01
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
C Carbon
dalkdt_h_o = 0.0
dalkdt_l_o = 0.0
dalkdt_d_o = 0.0
dalkdt_s_o = 0.0
ddicdt_h_o = 0.0
ddicdt_l_o = 0.0
ddicdt_d_o = 0.0
ddicdt_s_o = 0.0
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
c assign default/initial values
c
c ***************************************************************
c NOTE:
c INITIAL VALUES AND PARAMETERS READ IN FROM FILE input_values.dat
c VARIABLE KEY AND SUGGESTED DEFAULT VALUES IN inputs.list
c AND inputs.assign
c ***************************************************************
c
c all real except first, so convert to integer
nstepmax = int(parm(1))
dt = parm(2)
dx = parm(3)
dy_h = parm(4)
dy_l = parm(5)
dy_s = parm(6)
dz_l = parm(7)
dz_h = parm(8)
dz_d = parm(9)
atmos_po2 = parm(10)
Vp_h = parm(11)
Vp_l = parm(12)
Vp_s = parm(13)
mumpc = parm(14)
mumpn = parm(15)
kpo4pc = parm(16)
kpo4pn = parm(17)
kca = parm(18)
m_hd = parm(19)
m_ld = parm(20)
m_lh = parm(21)
m_ds = parm(22)
rem = parm(23)
remA = parm(24)
lambda_dc = parm(25)
lambda_dn = parm(26)
lambda_da = parm(27)
Ipo_h = parm(28)
Ipo_l = parm(29)
Ipo_s = parm(30)
Ia_h = parm(31)
Ia_l = parm(32)
Ia_s = parm(33)
Ic_h = parm(34)
Ic_l = parm(35)
Ic_s = parm(36)
write_years = parm(37)
p_frac_buried_shelf = parm(38)
np_burial = parm(39)
m_ls = parm(40)
k_denit_o2=parm(41)
dz_s = parm(42)
RC = parm(43)
RA = parm(44)
hc = parm(45)
hn = parm(46)
q = parm(47)
kcomp=parm(48)
omega=parm(49)
amp=parm(50)
atmos_pco2 = x(1)
po4_l = x(2)
po4_h = x(3)
po4_d = x(4)
po4_s = x(5)
dc_l = x(6)
dc_h = x(7)
dc_s = x(8)
dn_l = x(9)
dn_h = x(10)
dn_s = x(11)
da_l = x(12)
da_h = x(13)
da_s = x(14)
pc_l = x(15)
pc_h = x(16)
pc_s = x(17)
pn_l = x(18)
pn_h = x(19)
pn_s = x(20)
dic_l = x(21)
dic_h = x(22)
dic_d = x(23)
dic_s = x(24)
alk_l = x(25)
alk_h = x(26)
alk_d = x(27)
alk_s = x(28)
t_h = x(29)
t_l = x(30)
t_d = x(31)
t_s = x(32)
s_h = x(33)
s_l = x(34)
s_d = x(35)
s_s = x(36)
pc_d = x(37)
pn_d = x(38)
dc_d = x(39)
dn_d = x(40)
da_d = x(41)
time = x(42)
c ==========================================================
c MORE INTERESTING STUFF STARTS HERE xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
c MORE INTERESTING STUFF STARTS HERE xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
C SET SOME PARAMETERS HERE
c reference denisty (kg m-3)
rho_ref = 1025.0
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
C Carbon
C put in initial carbon concentrations here
C instead of reading in
c dic_h = 2000.0 * rho_ref
c dic_l = 2000.0 * rho_ref
c dic_d = 2000.0 * rho_ref
c dic_s = 2000.0 * rho_ref
c atmos_pco2 = 280.0e-6
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
c how often are we writing out model state?
c convert to number of steps
nwrite=(write_years*360.*86400.)/dt
c moles N2 in atmos - prescribed
c total moles air (modern) is about 1.8e20
atmos_moles_N2 = 1.8e20*0.79
c inital atmospheric O2 (can be prognostic though)
atmos_moles_O2 = 1.8e20*0.21
atmos_pO2 = atmos_moles_O2/(atmos_moles_O2+atmos_moles_N2)
atmos_moles_CO2 =
& (atmos_moles_N2+atmos_moles_O2)*atmos_pco2
c initial time
c time = 0.0
c derived dimension parameters
c determine volumes of ocean reservoirs from imposed length scales
dy_d = dy_h+dy_l
vol_h = dx*dy_h*dz_h
vol_l = dx*dy_l*dz_l
vol_d = dx*dy_d*dz_d
vol_s = dx*dy_s*dz_s
C FOR NUMERICAL STABILITY (may not be necessary)
C TRY SMALL TIMESTEP FOR INITIAL ADJUSTMENT
C ADJUST BY tstepfactor
C if tstepfactor=1 then no actual change
tstepfactor = 1.
dthold = dt
dt = dthold/tstepfactor
c +++++++++++++++++++++++++++++++++++==+++++++++++++++++++++++
c ++++++++ begin timestepping ++++++++++++++++++++++++++++++++
c ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
do nstep = 1, nstepmax
C IF USING SMALL INITIAL TIMESTEP, INCREASE AFTER 10000 ITERATIONS
if(nstep .eq. 100000)then
dt = dthold
end if
c initialize rates of change
dpo4dt_h = 0.
dpo4dt_l = 0.
dpo4dt_d = 0.
dpo4dt_s = 0.
ddicdt_h = 0.
ddicdt_l = 0.
ddicdt_d = 0.
ddicdt_s = 0.
dalkdt_h = 0.
dalkdt_l = 0.
dalkdt_d = 0.
dalkdt_s = 0.
ddcdt_h = 0.
ddcdt_l = 0.
ddcdt_s = 0.
ddndt_h = 0.
ddndt_l = 0.
ddndt_s = 0.
ddadt_h = 0.
ddadt_l = 0.
ddadt_s = 0.
dpcdt_h = 0.
dpcdt_l = 0.
dpcdt_s = 0.
dpndt_h = 0.
dpndt_l = 0.
dpndt_s = 0.
cccccccccccccccccccccccccccccccccccccccc
C Carbon
ddicdt_h = 0.
ddicdt_l = 0.
ddicdt_d = 0.
ddicdt_s = 0.
cccccccccccccccccccccccccccccccccccccccc
dpcdt_d = 0.
dpndt_d = 0.
ddcdt_d = 0.
ddndt_d = 0.
ddadt_d = 0.
c OCEAN TRANSPORT ..........................................
c CALL ocean_transport SUBROUTINE FOR EACH OCEAN TRACER
c transport po4
call ocean_transport(po4_h, po4_l, po4_d, po4_s,
& q, m_hd, m_ld, m_lh, m_ds, m_ls,
& vol_h, vol_l, vol_d, vol_s,
& dpo4dt_h, dpo4dt_l, dpo4dt_d,
& dpo4dt_s)
ccccccccccccccccccccccccccccccccccccccccccccc
C alkalinity
c transport alk
call ocean_transport(alk_h, alk_l, alk_d, alk_s,
& q, m_hd, m_ld, m_lh, m_ds, m_ls,
& vol_h, vol_l, vol_d, vol_s,
& dalkdt_h, dalkdt_l, dalkdt_d,
& dalkdt_s)
ccccccccccccccccccccccccccccccccccccccccccccc
C carbon
c transport dic
call ocean_transport(dic_h, dic_l, dic_d, dic_s,
& q, m_hd, m_ld, m_lh, m_ds, m_ls,
& vol_h, vol_l, vol_d, vol_s,
& ddicdt_h, ddicdt_l, ddicdt_d,
& ddicdt_s)
ccccccccccccccccccccccccccccccccccccccccccccc
C pc
c transport pc
call ocean_transport(pc_h, pc_l, pc_d, pc_s,
& q, m_hd, m_ld, m_lh, m_ds, m_ls,
& vol_h, vol_l, vol_d, vol_s,
& dpcdt_h, dpcdt_l, dpcdt_d,
& dpcdt_s)
ccccccccccccccccccccccccccccccccccccccccccccc
C pn
c transport pn
call ocean_transport(pn_h, pn_l, pn_d, pn_s,
& q, m_hd, m_ld, m_lh, m_ds, m_ls,
& vol_h, vol_l, vol_d, vol_s,
& dpndt_h, dpndt_l, dpndt_d,
& dpndt_s)
ccccccccccccccccccccccccccccccccccccccccccccc
C dc
c transport dc
call ocean_transport(dc_h, dc_l, dc_d, dc_s,
& q, m_hd, m_ld, m_lh, m_ds, m_ls,
& vol_h, vol_l, vol_d, vol_s,
& ddcdt_h, ddcdt_l, ddcdt_d,
& ddcdt_s)
ccccccccccccccccccccccccccccccccccccccccccccc
C dn
c transport dn
call ocean_transport(dn_h, dn_l, dn_d, dn_s,
& q, m_hd, m_ld, m_lh, m_ds, m_ls,
& vol_h, vol_l, vol_d, vol_s,
& ddndt_h, ddndt_l, ddndt_d,
& ddndt_s)
ccccccccccccccccccccccccccccccccccccccccccccc
C da
c transport da
call ocean_transport(da_h, da_l, da_d, da_s,
& q, m_hd, m_ld, m_lh, m_ds, m_ls,
& vol_h, vol_l, vol_d, vol_s,
& ddadt_h, ddadt_l, ddadt_d,
& ddadt_s)
ccccccccccccccccccccccccccccccccccccccccccccc
c ======== AIR-SEA EXCHANGE =====================================
c cumulate global air-sea oxygen flux for prognostic atmosphere
C Carbon
C AIR-SEA EXCHANGE
airseafluxCO2 = 0.0
call carbon_air_sea(dic_h, atmos_pco2, ddicdt_h, alk_h,
& Vp_h, dz_h, t_h, s_h, rho_ref, dt, nstep,
& co2flux, pf_h, ca_h)
airseafluxCO2 = airseafluxCO2 + co2flux*dx*dy_h
call carbon_air_sea(dic_l, atmos_pco2, ddicdt_l, alk_l,
& Vp_l, dz_l, t_l, s_l, rho_ref, dt, nstep,
& co2flux, pf_l, ca_l)
airseafluxCO2 = airseafluxCO2 + co2flux*dx*dy_l
call carbon_air_sea(dic_s, atmos_pco2, ddicdt_s, alk_s,
& Vp_s, dz_s, t_s, s_s, rho_ref, dt, nstep,
& co2flux, pf_s, ca_s)
airseafluxCO2 = airseafluxCO2 + co2flux*dx*dy_s
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
c write(6,*) atmos_pco2, ca_l
mmpc=mumpc*(1+amp*dcos(omega*time))
c ===== DETERMINE PC GROWTH ===============================
c high lat pc growth in phosphorus units
dpcdt_h = dpcdt_h + mmpc/(1+kpo4pc/po4_h+kca/ca_h
& -1/(po4_h/kpo4pc+ca_h/kca))*pc_h-hc*pc_h
c low lat pc growth in phosphorus units
dpcdt_l = dpcdt_l + mmpc/(1+kpo4pc/po4_l+kca/ca_l
& -1/(po4_l/kpo4pc+ca_l/kca))*pc_l-hc*pc_l
c deep pc decay in phosphorus units
dpcdt_d = dpcdt_d-hc*pc_d
c shelf pc growth in phosphorus units
dpcdt_s = dpcdt_s + mmpc/(1+kpo4pc/po4_s+kca/ca_s
& -1/(po4_s/kpo4pc+ca_s/kca))*pc_s-hc*pc_s
c high lat pn growth in phosphorus units
dpndt_h = dpndt_h + mumpn/(1+kpo4pn/po4_h)*pn_h-hn*pn_h
c low lat pn growth in phosphorus units
dpndt_l = dpndt_l + mumpn/(1+kpo4pn/po4_l)*pn_l-hn*pn_l
c deep pn decay in phosphorus units
dpndt_d = dpndt_d-hn*pn_d
c shelf pn growth in phosphorus units
dpndt_s = dpndt_s + mumpn/(1+kpo4pn/po4_s)*pn_s-hn*pn_s
c high lat dc in phosphorus units
ddcdt_h = ddcdt_h + hc*pc_h-rem*dc_h-lambda_dc*dc_h
c low lat dc in phosphorus units
ddcdt_l = ddcdt_l + hc*pc_l-rem*dc_l-lambda_dc*dc_l
c deep dc in phosphorus units
ddcdt_d = ddcdt_d + hc*pc_d-rem*dc_d
c shelf dc in phosphorus units
ddcdt_s = ddcdt_s + hc*pc_s-rem*dc_s-lambda_dc*dc_s
c high lat dn in phosphorus units
ddndt_h = ddndt_h + hn*pn_h-rem*dn_h-lambda_dn*dn_h
c low lat dn in phosphorus units
ddndt_l = ddndt_l + hn*pn_l-rem*dn_l-lambda_dn*dn_l
c deep dn in phosphorus units
ddndt_d = ddndt_d + hn*pn_d-rem*dn_d
c shelf dn in phosphorus units
ddndt_s = ddndt_s + hn*pn_s-rem*dn_s-lambda_dn*dn_s
c high lat da in alk units
ddadt_h = ddadt_h + RA*hc*pc_h-remA*da_h-lambda_da*da_h
c low lat da in alk units
ddadt_l = ddadt_l + RA*hc*pc_l-remA*da_l-lambda_da*da_l
c deep da in alk units
ddadt_d = ddadt_d + RA*hc*pc_d-remA*da_d
c shelf da in alk units
ddadt_s = ddadt_s + RA*hc*pc_s-remA*da_s-lambda_da*da_s
c update po4 surface tendencies
dpo4dt_h = dpo4dt_h + Ipo_h-mmpc/
& (1+kpo4pc/po4_h+kca/ca_h-1/(po4_h/kpo4pc+ca_h/kca))*pc_h
& -mumpn/(1+kpo4pn/po4_h)*pn_h+rem*(dc_h+dn_h)
dpo4dt_l = dpo4dt_l + Ipo_l-mmpc/
& (1+kpo4pc/po4_l+kca/ca_l-1/(po4_l/kpo4pc+ca_l/kca))*pc_l
& -mumpn/(1+kpo4pn/po4_l)*pn_l+rem*(dc_l+dn_l)
dpo4dt_s = dpo4dt_s + Ipo_s-mmpc/
& (1+kpo4pc/po4_s+kca/ca_s-1/(po4_s/kpo4pc+ca_s/kca))*pc_s
& -mumpn/(1+kpo4pn/po4_s)*pn_s+rem*(dc_s+dn_s)
dalkdt_h = dalkdt_h + Ia_h-RA*mmpc/
& (1+kpo4pc/po4_h+kca/ca_h-1/(po4_h/kpo4pc+ca_h/kca))*pc_h
& +remA*da_h
dalkdt_l = dalkdt_l + Ia_l-RA*mmpc/
& (1+kpo4pc/po4_l+kca/ca_l-1/(po4_l/kpo4pc+ca_l/kca))*pc_l
& +remA*da_l
dalkdt_s = dalkdt_s + Ia_s-RA*mmpc/
& (1+kpo4pc/po4_s+kca/ca_s-1/(po4_s/kpo4pc+ca_s/kca))*pc_s
& +remA*da_s
ccccccccccccccccccccccccccccccccccccccccccccc
C carbon
c update dic surface tendencies
ddicdt_h = ddicdt_h + Ic_h-(RC+0.5*RA)*mmpc/
& (1+kpo4pc/po4_h+kca/ca_h-1/(po4_h/kpo4pc+ca_h/kca))*pc_h
& -RC*(mumpn/(1+kpo4pn/po4_h)*pn_h-rem*(dc_h+dn_h))
& +0.5*remA*da_h
ddicdt_l = ddicdt_l + Ic_l-(RC+0.5*RA)*mmpc/
& (1+kpo4pc/po4_l+kca/ca_l-1/(po4_l/kpo4pc+ca_l/kca))*pc_l
& -RC*(mumpn/(1+kpo4pn/po4_l)*pn_l-rem*(dc_l+dn_l))
& +0.5*remA*da_l
ddicdt_s = ddicdt_s + Ic_s-(RC+0.5*RA)*mmpc/
& (1+kpo4pc/po4_s+kca/ca_s-1/(po4_s/kpo4pc+ca_s/kca))*pc_s
& -RC*(mumpn/(1+kpo4pn/po4_s)*pn_s-rem*(dc_s+dn_s))
& +0.5*remA*da_s
ccccccccccccccccccccccccccccccccccccccccccccc
c ======== DEEP OCEAN REMINERALIZATION/BURIAL ======================
c po4 regeneration
C WITH BURIAL AND COMPENSATING SOURCE ....................
c first decide fraction of sinking particulate phosphorus buried
c simple exponential particle flux profile, scale height zstar
c p_frac_buried = 1.0*exp(-dz_d/zstar)
p_frac_buried = 0.0
a_frac_buried = min(real(1),
& max(real(0),(alk_d-dic_d-0.052)/0.095))
c a_frac_buried = 1.0*exp(-dz_d/zstar)
c IF BURIAL NOT = 0, NEED COMPENSATING P SOURCE SOMEWHERE
c MICK - SET NO BURIAL ..............
c NO BURIAL, fix p_frac_buried = 0.0
c p_frac_buried = 0.0
c OVERIDING INPUT HERE: fix p_frac_buried_shelf = 0.0
p_frac_buried_shelf = 0.0
a_frac_buried_shelf = 1.0
dpo4dt_d = dpo4dt_d + (1-p_frac_buried)*
& ((vol_h*lambda_dc*dc_h+vol_l*lambda_dc*dc_l)/vol_d
& +(vol_h*lambda_dn*dn_h+vol_l*lambda_dn*dn_l)/vol_d)
& +(1-p_frac_buried_shelf)*
& vol_s*(lambda_dc*dc_s+lambda_dn*dn_s)/vol_d
& +rem*(dc_d+dn_d)
c SHELF
c shelf box has export, regeneration and burial in one layer!
c SPECIFY burial fraction on shelf (p_frac_buried_shelf)
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
C Carbon
ca_sat = 0.1
ddicdt_d = ddicdt_d + Ic_s + RC*(1-p_frac_buried)*
& ((vol_h*lambda_dc*dc_h+vol_l*lambda_dc*dc_l)/vol_d
& +(vol_h*lambda_dn*dn_h+vol_l*lambda_dn*dn_l)/vol_d)
& +RC*(1-p_frac_buried_shelf)*vol_s
& *(lambda_dc*dc_s+lambda_dn*dn_s)/vol_d
& + 0.5*(1-a_frac_buried)*
& (vol_h*lambda_da*da_h+vol_l*lambda_da*da_l)/vol_d
& +0.5*(1-a_frac_buried_shelf)*vol_s*lambda_da*da_s/vol_d
& +RC*rem*(dc_d+dn_d)+0.5*remA*da_d
c & -max(real(0),0.5*kcomp*(alk_d-dic_d-ca_sat))
CCCCCCCCCCCCCCCCC...CCCCCCCCCCCCCC
C Alkalinity
dalkdt_d = dalkdt_d + Ia_s + (1-a_frac_buried)
& *(vol_h*lambda_da*da_h+vol_l*lambda_da*da_l)/vol_d
& +(1-a_frac_buried_shelf)*vol_s*lambda_da*da_s/vol_d
& +remA*da_d
c & -max(real(0),kcomp*(alk_d-dic_d-ca_sat))
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
c shelf
c likewise consume o2 with regeneration
c IF(o2_s .gt. 4.0e-6*rho_ref)THEN
c do2dt_s = do2dt_s -
c & ( (R_cp/R_co)*export_s
c & - (R_cp/R_co)*p_frac_buried_shelf*export_s )
c ENDIF
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
c +++++++ PROGNOSTIC STEP +++++++++++++++++++++++++++++++++++++++++
cMICK euler forward or adams-bashforth type ...
c i_timestep = 0 for euler forward, 1 for adams-bashforth
C N.B. DO NOT USE A-B SCHEME !!!!!!!!
i_timestep = 0
if(i_timestep .eq. 1)then
ab1 = (-0.5-epsilon)
ab0 = (1.5+epsilon)
else
ab1 = 1.0
ab0 = 0.0
endif
c po4 .................
po4_h = po4_h +
& (dpo4dt_h*ab1 + dpo4dt_h_o*ab0)*dt
po4_l = po4_l +
& (dpo4dt_l*ab1 + dpo4dt_l_o*ab0)*dt
po4_d = po4_d +
& (dpo4dt_d*ab1 + dpo4dt_d_o*ab0)*dt
po4_s = po4_s +
& (dpo4dt_s*ab1 + dpo4dt_s_o*ab0)*dt
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
c pc .................
pc_h = pc_h +
& (dpcdt_h*ab1 + dpcdt_h_o*ab0)*dt
pc_l = pc_l +
& (dpcdt_l*ab1 + dpcdt_l_o*ab0)*dt
pc_d = pc_d +
& (dpcdt_d*ab1 + dpcdt_d_o*ab0)*dt
pc_s = pc_s +
& (dpcdt_s*ab1 + dpcdt_s_o*ab0)*dt
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
c pn .................
pn_h = pn_h +
& (dpndt_h*ab1 + dpndt_h_o*ab0)*dt
pn_l = pn_l +
& (dpndt_l*ab1 + dpndt_l_o*ab0)*dt
pn_d = pn_d +
& (dpndt_d*ab1 + dpndt_d_o*ab0)*dt
pn_s = pn_s +
& (dpndt_s*ab1 + dpndt_s_o*ab0)*dt
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
c dc .................
dc_h = dc_h +
& (ddcdt_h*ab1 + ddcdt_h_o*ab0)*dt
dc_l = dc_l +
& (ddcdt_l*ab1 + ddcdt_l_o*ab0)*dt
dc_d = dc_d +
& (ddcdt_d*ab1 + ddcdt_d_o*ab0)*dt
dc_s = dc_s +
& (ddcdt_s*ab1 + ddcdt_s_o*ab0)*dt
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
c dn .................
dn_h = dn_h +
& (ddndt_h*ab1 + ddndt_h_o*ab0)*dt
dn_l = dn_l +
& (ddndt_l*ab1 + ddndt_l_o*ab0)*dt
dn_d = dn_d +
& (ddndt_d*ab1 + ddndt_d_o*ab0)*dt
dn_s = dn_s +
& (ddndt_s*ab1 + ddndt_s_o*ab0)*dt
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
c da .................
da_h = da_h +
& (ddadt_h*ab1 + ddadt_h_o*ab0)*dt
da_l = da_l +
& (ddadt_l*ab1 + ddadt_l_o*ab0)*dt
da_d = da_d +
& (ddadt_d*ab1 + ddadt_d_o*ab0)*dt
da_s = da_s +
& (ddadt_s*ab1 + ddadt_s_o*ab0)*dt
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
C Alkalinity
alk_h = alk_h +
& (dalkdt_h*ab1 + dalkdt_h_o*ab0)*dt
alk_l = alk_l +
& (dalkdt_l*ab1 + dalkdt_l_o*ab0)*dt
alk_d = alk_d +
& (dalkdt_d*ab1 + dalkdt_d_o*ab0)*dt
alk_s = alk_s +
& (dalkdt_s*ab1 + dalkdt_s_o*ab0)*dt
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
C Carbon
dic_h = dic_h +
& (ddicdt_h*ab1 + ddicdt_h_o*ab0)*dt
dic_l = dic_l +
& (ddicdt_l*ab1 + ddicdt_l_o*ab0)*dt
dic_d = dic_d +
& (ddicdt_d*ab1 + ddicdt_d_o*ab0)*dt
dic_s = dic_s +
& (ddicdt_s*ab1 + ddicdt_s_o*ab0)*dt
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
C Carbon
atmos_moles_CO2 = atmos_moles_CO2 - airseafluxCO2*dt
atmos_pco2 = atmos_moles_CO2/
& (atmos_moles_O2+atmos_moles_N2+atmos_moles_CO2)
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
c write(6,*) ca_h
c step forward time variable
time = time + dt
c advance timestepping variables
dpo4dt_h_o = dpo4dt_h
dpo4dt_l_o = dpo4dt_l
dpo4dt_d_o = dpo4dt_d
dpo4dt_s_o = dpo4dt_s
dpcdt_h_o = dpcdt_h
dpcdt_l_o = dpcdt_l
dpcdt_s_o = dpcdt_s
dpndt_h_o = dpndt_h
dpndt_l_o = dpndt_l
dpndt_s_o = dpndt_s
ddcdt_h_o = ddcdt_h
ddcdt_l_o = ddcdt_l
ddcdt_s_o = ddcdt_s
ddndt_h_o = ddndt_h
ddndt_l_o = ddndt_l
ddndt_s_o = ddndt_s
ddadt_h_o = ddadt_h
ddadt_l_o = ddadt_l
ddadt_s_o = ddadt_s
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
C Carbon
dalkdt_h_o = dalkdt_h
dalkdt_l_o = dalkdt_l
dalkdt_d_o = dalkdt_d
dalkdt_s_o = dalkdt_s
ddicdt_h_o = ddicdt_h
ddicdt_l_o = ddicdt_l
ddicdt_d_o = ddicdt_d
ddicdt_s_o = ddicdt_s
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
c check - determine volume integral of po4
TotalP = po4_h*vol_h + po4_l*vol_l +
& po4_d*vol_d
& + po4_s*vol_s
DICtot = (dic_h+RC*(pc_h+pn_h+dc_h)+0.5*da_h)*vol_h
& + (dic_l+RC*(pc_l+pn_l+dc_l)+0.5*da_l)*vol_l +
& (dic_d+RC*(pc_d+pn_d+dc_d)+0.5*da_d)*vol_d
& + (dic_s+RC*(pc_s+pn_s+dc_s)+0.5*da_s)*vol_s
& + atmos_moles_CO2
ALKtot = (alk_h+RA*pc_h+da_h)*vol_h
& + (alk_l+RA*pc_l+da_l)*vol_l +
& (alk_d+RA*pc_d+da_d)*vol_d
& + (alk_s+RA*pc_s+da_s)*vol_s
C DIAGNOSTICS TO SCREEN AND FILE ====================================
c write some output to the screen
if(nstep .eq. 1)then